Hi there, I've some troubles with parcellisation schemes. I've used mri_annotation2label to extract labels within annot file. When I read the annot file within matlab (read_annotation.m), I found 869 entries, everything looks good so far. However, when I look at the output directory of labels, I only found 770 label file. For another parcellisation scheme, I found 325 entries in annot file and 496 label files... These findings are consistent across several subjects. So my question is how mri_annotation2label processes annot file? and how to find correspondence between annot and label files? Any advice would be greatly appreciate,
Hi Arnaud
this question may need to wait for Doug to return. If you don't get an answer in a couple of days try reposting, and please include your exact command line and screen output and FS version.
cheers Bruce
On Wed, 11 Jul 2012, Arnaud Messé wrote:
Hi there, I've some troubles with parcellisation schemes. I've used mri_annotation2label to extract labels within annot file. When I read the annot file within matlab (read_annotation.m), I found 869 entries, everything looks good so far. However, when I look at the output directory of labels, I only found 770 label file. For another parcellisation scheme, I found 325 entries in annot file and 496 label files... These findings are consistent across several subjects. So my question is how mri_annotation2label processes annot file? and how to find correspondence between annot and label files? Any advice would be greatly appreciate,
Can you send your command line and the full terminal output? doug
On 07/11/2012 09:39 AM, Bruce Fischl wrote:
Hi Arnaud
this question may need to wait for Doug to return. If you don't get an answer in a couple of days try reposting, and please include your exact command line and screen output and FS version.
cheers Bruce
On Wed, 11 Jul 2012, Arnaud Messé wrote:
Hi there, I've some troubles with parcellisation schemes. I've used mri_annotation2label to extract labels within annot file. When I read the annot file within matlab (read_annotation.m), I found 869 entries, everything looks good so far. However, when I look at the output directory of labels, I only found 770 label file. For another parcellisation scheme, I found 325 entries in annot file and 496 label files... These findings are consistent across several subjects. So my question is how mri_annotation2label processes annot file? and how to find correspondence between annot and label files? Any advice would be greatly appreciate,
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