Can I suggest to change the file name from .IMA to .ima?

Wan

On Apr 19, 2005, at 9:14 AM, Bruce Fischl wrote:

Hi Kristine,

you can send us a series and we'll look at them if you want. Bruce On Tue, 19 Apr 2005, Kristine Beate Walhovd wrote:

...

Hi Bruce

I tried -it siemens too (based on some list question) and that did't work either, but I see now that hey are named .IMA not .ima

Sorry, the FW-disk I got them from likely caused the problem.

Thanks,

Kristine

-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tue 4/19/2005 12:00 AM To: Kristine Beate Walhovd Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Problem converting IMA files Hi Kristine,

mri_convert should handle ima files. Have you tried -it siemens? Are they named .ima?

cheers, Bruce

On Tue, 19 Apr 2005, Kristine Beate Walhovd wrote:

...

Hi

I've tried converting IMA files (taken directly from the Siemens scanner) in Freesurfer with the command

mri_convert -ot cor <one filename in the sequence> <output file>

but it doesn't work. Gives an error message "cannot parse..." (see attached error message).

I'd be grateful for any suggestions.

Thanks,

Kristine

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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

No there isn't, but you can write your own tcl script.

Here is an example how you could do it: http://www.mail-archive.com/freesurfer@mail.nmr.mgh.harvard.edu/ msg00958.html

What you're interested in is the tcl commands: set rgb <filename> set val <wfile> sclv_read_binary_values 0 redraw save_rgb

Mark

On May 19, 2005, at 12:26 PM, Daniel Goldenholz wrote:

HINT Is there a one line command that I can give tksurfer to open a surface AND an overlay (*.w) file? This would save me lots of time because I often open such things...