Dear FS experts
I used mri_annotation2label to extract the superior frontal gyrus label from the aparc annotation. I edited (cut plane) this label in tksurfer and then tried to save it using Save Selected Label. However, the whole label is saved including also the part that I have cut away.
Any idea what is going wrong here?
Thanks in advance Regards Jürgen
---------------------------------------------------------------------------- Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
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Hi Jürgen
it wounds like you edited the surface, but did you edit the label? Did you remove part of it in the fill dialog box? You might be better off just creating a new one using the same procedure, then using custom fill
cheers Bruce On Thu, 25 Oct 2012, Jürgen Hänggi wrote:
Dear FS experts
I used mri_annotation2label to extract the superior frontal gyrus label from the aparc annotation. I edited (cut plane) this label in tksurfer and then tried to save it using Save Selected Label. However, the whole label is saved including also the part that I have cut away.
Any idea what is going wrong here?
Thanks in advance Regards Jürgen
Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
This e-mail (and any attachment/s) contains confidential and/or privileged information. If you are not the intended recipient (or have received this e-mail in error) please notify the sender immediately and destroy this e-mail. Any unauthorised copying, disclosure or distribution of the material in this e-mail is strictly forbidden.
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Hi Bruce
Thanks for the advise. It works with the fill dialog box
Cheers Jürgen
On [DATE], "Bruce Fischl" <[ADDRESS]> wrote:
Hi Jürgen
it wounds like you edited the surface, but did you edit the label? Did you remove part of it in the fill dialog box? You might be better off just creating a new one using the same procedure, then using custom fill
cheers Bruce On Thu, 25 Oct 2012, Jürgen Hänggi wrote:
Dear FS experts
I used mri_annotation2label to extract the superior frontal gyrus label from the aparc annotation. I edited (cut plane) this label in tksurfer and then tried to save it using Save Selected Label. However, the whole label is saved including also the part that I have cut away.
Any idea what is going wrong here?
Thanks in advance Regards Jürgen
Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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---------------------------------------------------------------------------- Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
This e-mail (and any attachment/s) contains confidential and/or privileged information. If you are not the intended recipient (or have received this e-mail in error) please notify the sender immediately and destroy this e-mail. Any unauthorised copying, disclosure or distribution of the material in this e-mail is strictly forbidden. ----------------------------------------------------------------------------
I'm glad it worked out Bruce
On Oct 26, 2012, at 1:40 AM, Jürgen Hänggij.haenggi@psychologie.uzh.ch wrote:
Hi Bruce
Thanks for the advise. It works with the fill dialog box
Cheers Jürgen
On [DATE], "Bruce Fischl" <[ADDRESS]> wrote:
Hi Jürgen
it wounds like you edited the surface, but did you edit the label? Did you remove part of it in the fill dialog box? You might be better off just creating a new one using the same procedure, then using custom fill
cheers Bruce On Thu, 25 Oct 2012, Jürgen Hänggi wrote:
Dear FS experts
I used mri_annotation2label to extract the superior frontal gyrus label from the aparc annotation. I edited (cut plane) this label in tksurfer and then tried to save it using Save Selected Label. However, the whole label is saved including also the part that I have cut away.
Any idea what is going wrong here?
Thanks in advance Regards Jürgen
Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
This e-mail (and any attachment/s) contains confidential and/or privileged information. If you are not the intended recipient (or have received this e-mail in error) please notify the sender immediately and destroy this e-mail. Any unauthorised copying, disclosure or distribution of the material in this e-mail is strictly forbidden.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
This e-mail (and any attachment/s) contains confidential and/or privileged information. If you are not the intended recipient (or have received this e-mail in error) please notify the sender immediately and destroy this e-mail. Any unauthorised copying, disclosure or distribution of the material in this e-mail is strictly forbidden.
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