Hi Katie, can you run it with -debug as the first arg and send me the copious terminal output? doug

On 08/30/2013 01:53 PM, Kathryn Devaney wrote:

Hi Doug & Surfers,

I'm having this same issue. I'm running funcroi-table-sess on two analyses (lh and rh). There was no 'log' folder in my working directory, so I created it. Everythingran fine for the lh, but when I try to run it in the rh I get

set: Variable name must begin with a letter

Here's the output of 'bugr' on my machine:

---

FREESURFER_HOME: /scratch/local/pkg/freesurfer/freesurfer-5.1.0

Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0

RedHat release: Fedora release 17 (Beefy Miracle)

Kernel info: Linux 3.6.3-1.fc17.x86_64 x86_64

---

Let me know if you'd like me to send the terminal output of funcroi-table-sess -debug

Thanks! Katie

On 8/19/13 4:05 PM, Douglas N Greve wrote:

...

Is there a folder called "log" in the directly you are running it from? If not, try creating one. If so, then run it with -debug as the first arg and send me the terminal output.

doug

On 08/19/2013 02:07 PM, Joseph Andreano wrote:

...

Hi All,

I'm trying to use funcroi-table-sess, but whenever I send this command:

funcroi-table-sess -roi l_amyg_test -analysis habit_concat.mni305 -contrast neg1Vfix -sf subjects.lst -o l_amyg_neg1Vfix.dat

I get this error:

set: Variable name must begin with a letter

So far as I can tell, all the variables in that command begin with a letter. Any idea what the problem might be?

---

Joseph M. Andreano, PhD Postdoctoral Researcher Interdisciplinary Affective Science Laboratory Massachusetts General Hospital _________________________________ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer