Joost,

Try adjusting the overlay display in tksurfer: View->Configure->Overlay, then select Linear Threshold, and try changing the Min and Max.

Nick

On Thu, 2008-09-11 at 12:28 +0200, j janssen wrote:

Hi,

i´m using stable v4.0.5 (for Cent OS 4 x86_64). i have matlab version 7.5.

for a brain i have ?h.pial surfaces which give "total defect index = 0" when doing: mris_euler_number ?h.pial

for this brain i ran:

recon-all -s <subj> -localGI

the log tells me that: "recon-all finished without error at Thu Sep 11 00:18:56 CEST 2008"

however, when i overlay lh.pial_lgi (attached lgi_2.jpg) it does not seem correct.

my question: have i done something wrong?

thanks!

-joost

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer