Try removing the tksurfer.new.tcl file and starting tksurfer again.

On Wed, 10 Mar 2004, Pål G. Larsson wrote:

I have encountered a problem with the last update. The Tksurfer comes up with a greyish graphics window and a relative small control window without text, menus or anything. The .xdebug_tksurfer log is empty; as the csurf log contains:

###################################################### csurf0.9: log ending: Wed Mar 10 15:56:48 CET 2004 ######################################################

############# Command Log #############

########### Medit Log ###########

############ Surfer Log ############ env tksurferinterface=csurf patchname= /usr/local/freesurfer/bin/Linux/tksurfer -ELVHEIM_TROND rh pial -tcl /tmp/TmpTclSurf.7597 ltMNIread: could not open file /usr/local/freesurfer/subjects/ELVHEIM_TROND/mri/transforms/talairach.xfm No such file or directory Xlib: connection to ":0.0" refused by server Xlib: No protocol specified

surfer: current subjects dir: /usr/local/freesurfer/subjects surfer: in subjects "scripts" dir surfer: session root data dir ($session) set to: surfer: /sse/gyrus2/subjects/ELVHEIM_TROND surfer: /usr/local/freesurfer/subjects/ELVHEIM_TROND/mri/T1/COR-.info surfer: Talairach xform file not found (ignored) surfer: vertices=149374, faces=298744 surfer: single buffered window surfer: using interface /usr/local/freesurfer/lib/tcl/tksurfer.new.tcl can't read "env(MRI_DIR)": no such variablesurfer: couldn't dis/enable menu set 0: invalid command name "tkm_SetMenuItemGroupStatus" surfer: couldn't dis/enable menu set 1: invalid command name "tkm_SetMenuItemGroupStatus" surfer: couldn't dis/enable menu set 2: invalid command name "tkm_SetMenuItemGroupStatus" surfer: couldn't dis/enable menu set 4: invalid command name "tkm_SetMenuItemGroupStatus" surfer: couldn't dis/enable menu set 5: invalid command name "tkm_SetMenuItemGroupStatus" surfer: couldn't dis/enable menu set 6: invalid command name "tkm_SetMenuItemGroupStatus" surfer: couldn't dis/enable menu set 7: invalid command name "tkm_SetMenuItemGroupStatus" surfer: couldn't dis/enable menu set 8: invalid command name "tkm_SetMenuItemGroupStatus" surfer: couldn't dis/enable menu set 9: invalid command name "tkm_SetMenuItemGroupStatus" tksurfer: run tcl script: /tmp/TmpTclSurf.7597

Pål G. Larsson National Centre for Epilepsy Norway E-mail: pal.g.larsson@epilepsy.no Tel: (+47) 67554253