Can you tar up just the rh.aparc.stats files and send them to me?

On 12/21/2017 03:41 PM, Maksimovskiy, Arkadiy wrote:

Hi All,

I wanted to follow up on this thread because I have been getting a similar type of an error.

Here is the info from the terminal:

[arkadiysimac:Freesurfer/Freesurfer_Files_with_Freesurfer_Masks/Post_Manual_Edits] amaksimovskiy% aparcstats2table --subjects SILVA033 SILVA035 SILVA039 SILVA040 SILVA041 SILVA044 SILVA046 SILVA048 SILVA049 SILVA050 SILVA051 SILVA052 --hemi rh --meas volume --parc aparc --tablefile  Desikan_rh_volume_table.Dec17.txt

SUBJECTS_DIR : /Volumes/silverilab/Arkadiy/Freesurfer/Freesurfer_Files_with_Freesurfer_Masks/Post_Manual_Edits

Parsing the .stats files

Traceback (most recent call last):

File "/Applications/freesurfer/bin/aparcstats2table", line 376, in

<module>

parc_measure_map = parsed.parse(options.meas)

File "/Applications/freesurfer/bin/fsutils.py", line 215, in parse

val = float(strlist[self.measure_column_map[measure]])

IndexError: list index out of range

Note: If I run the “aparcstats2table” command separately for each file, an error does not occur (i.e. when I do “aparcstats2table asegstats2table -s SILVA033 --meas volume --stats wmparc.stats --tablefile Subcortical_WM_Volume1.Dec17_SILVA033.txt).

I would love to hear if anyone has solutions for this.

Thanks,

Arkadiy

--

Arkadiy L. Maksimovskiy, Ph.D.

Postdoctoral Research Fellow McLean Imaging Center, McLean Hospital Department of Psychiatry, Harvard Medical School

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