Dear FS experts

We analysed data with FS 4.0.1. In the past, when analyzed this data with FS 3.0.5 everthing worked fine. Now with FS 4.0.1 an error occurred maybe due to a dimension mismatch.

mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.mgz wm.mgz filled.mgz

logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 0.971 -0.044 -0.018 10.786; 0.050 1.089 0.053 6.110; 0.023 -0.037 0.908 10.383; 0.000 0.000 0.000 1.000; voxel to talairach voxel transform 0.971 -0.044 -0.018 12.779; 0.050 1.089 0.053 1.874; 0.023 -0.037 0.908 12.727; 0.000 0.000 0.000 1.000; reading segmented volume aseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 6094 (min = 350, max = 1400), aspect = 0.84 (min = 0.10, max = 0.75) need search nearby using seed (148, 150, 159), TAL = (-20.0, 31.0, -22.0) talairach voxel to voxel transform 1.028 0.042 0.017 -11.521; -0.046 0.914 -0.055 -4.525; -0.028 0.036 1.099 -11.334; 0.000 0.000 0.000 1.000; segmentation indicates cc at (148, 150, 159) --> (-20.0, 31.0, -22.0) ERROR: mri_fill-MRIcheckVolDims: volume1 height=256 != volume2 height=300.

talairach cc position changed to (-20.00, 31.00, -22.00) Erasing brainstem...Linux 130.60.235.1 2.6.9-67.ELsmp #1 SMP Wed Nov 7 13:58:04 EST 2007 i686 i686 i386 GNU/Linux

recon-all exited with ERRORS at Wed Dec 12 03:34:18 CET 2007

How to fix that problem?

Thanks in advance Best regards Juergen

----------------------------------------------------------- Juergen Haenggi Ph.D. (Dr. des.) Division of Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi@psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website) -----------------------------------------------------------