Hi Anastasia and FreeSurfers:
Is it possible to model Tracula data on Qdec? I have some interesting findings in FA and AD between two groups that I am hoping to visually represent on a single brain.
Any advice would be deeply appreciated.
thank you,
Alan
Hi Alan - Glad to hear that you have an interesting finding! Can you describe what type of thing you want to visualize a bit more? If it's not on the surface, freeview will more likely do the trick rather than qdec.
a.y
On Fri, 13 Sep 2013, Alan Francis wrote:
Hi Anastasia and FreeSurfers:
Is it possible to model Tracula data on Qdec? I have some interesting findings in FA and AD between two groups that I am hoping to visually represent on a single brain.
Any advice would be deeply appreciated.
thank you,
Alan
Hi Anastasia:
Thanks for your quick reply. We would like to look at the left and right Cortico-spinal tract AD between the groups. Also left and right ATR AD if possible.
thanks again,
Alan
On Fri, Sep 13, 2013 at 10:53 AM, Anastasia Yendiki < ayendiki@nmr.mgh.harvard.edu> wrote:
Hi Alan - Glad to hear that you have an interesting finding! Can you describe what type of thing you want to visualize a bit more? If it's not on the surface, freeview will more likely do the trick rather than qdec.
a.y
On Fri, 13 Sep 2013, Alan Francis wrote:
Hi Anastasia and FreeSurfers:
Is it possible to model Tracula data on Qdec? I have some interesting findings in FA and AD between two groups that I am hoping to visually represent on a single brain.
Any advice would be deeply appreciated.
thank you,
Alan
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Alan - Are you looking at average AD over the whole tract, or AD along the tract?
a.y
On Fri, 13 Sep 2013, Alan Francis wrote:
Hi Anastasia:
Thanks for your quick reply. We would like to look at the left and right Cortico-spinal tract AD between the groups. Also left and right ATR AD if possible.
thanks again,
Alan
On Fri, Sep 13, 2013 at 10:53 AM, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:
Hi Alan - Glad to hear that you have an interesting finding! Can you describe what type of thing you want to visualize a bit more? If it's not on the surface, freeview will more likely do the trick rather than qdec. a.y On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia and FreeSurfers: Is it possible to model Tracula data on Qdec? I have some interesting findings in FA and AD between two groups that I am hoping to visually represent on a single brain. Any advice would be deeply appreciated. thank you, AlanThe information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Anastasia:
I am looking at Average AD in these tracts.
thanks,
Alan
On Fri, Sep 13, 2013 at 11:37 AM, Anastasia Yendiki < ayendiki@nmr.mgh.harvard.edu> wrote:
Hi Alan - Are you looking at average AD over the whole tract, or AD along the tract?
a.y
On Fri, 13 Sep 2013, Alan Francis wrote:
Hi Anastasia:
Thanks for your quick reply. We would like to look at the left and right Cortico-spinal tract AD between the groups. Also left and right ATR AD if possible.
thanks again,
Alan
On Fri, Sep 13, 2013 at 10:53 AM, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:
Hi Alan - Glad to hear that you have an interesting finding! Can you describe what type of thing you want to visualize a bit more? If it's not on the surface, freeview will more likely do the trick rather than qdec. a.y On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia and FreeSurfers: Is it possible to model Tracula data on Qdec? I have some interesting findings in FA and AD between two groups that I am hoping to visually represent on a single brain. Any advice would be deeply appreciated. thank you, AlanThe information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
I see, then it's an ROI analysis, where the tract is the ROI. Isn't it sufficient for you to visualize the tracts in an example subject with the -tv option in freeview? What would you like to do beyond that?
On Fri, 13 Sep 2013, Alan Francis wrote:
Hi Anastasia:
I am looking at Average AD in these tracts.
thanks,
Alan
On Fri, Sep 13, 2013 at 11:37 AM, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:
Hi Alan - Are you looking at average AD over the whole tract, or AD along the tract? a.y On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia: Thanks for your quick reply. We would like to look at the left and right Cortico-spinal tract AD between the groups. Also left and right ATR AD if possible. thanks again, Alan On Fri, Sep 13, 2013 at 10:53 AM, Anastasia Yendiki <ayendiki@nmr.mgh.harvard.edu> wrote: Hi Alan - Glad to hear that you have an interesting finding! Can you describe what type of thing you want to visualize a bit more? If it's not on the surface, freeview will more likely do the trick rather than qdec. a.y On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia and FreeSurfers: Is it possible to model Tracula data on Qdec? I have some interesting findings in FA and AD between two groups that I am hoping to visually represent on a single brain. Any advice would be deeply appreciated. thank you, Alan The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Anastasia:
Yes I generated the left CST on a single subject using the Freeview -tv option. But my boss wanted to know if it was possible to do a voxelwise group analysis and show mean differences on a single inflated brain.
thanks,
Alan
On Fri, Sep 13, 2013 at 11:43 AM, Anastasia Yendiki < ayendiki@nmr.mgh.harvard.edu> wrote:
I see, then it's an ROI analysis, where the tract is the ROI. Isn't it sufficient for you to visualize the tracts in an example subject with the -tv option in freeview? What would you like to do beyond that?
On Fri, 13 Sep 2013, Alan Francis wrote:
Hi Anastasia:
I am looking at Average AD in these tracts.
thanks,
Alan
On Fri, Sep 13, 2013 at 11:37 AM, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:
Hi Alan - Are you looking at average AD over the whole tract, or AD along the tract? a.y On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia: Thanks for your quick reply. We would like to look at the left and right Cortico-spinal tract AD between the groups. Also left and right ATR AD if possible. thanks again, Alan On Fri, Sep 13, 2013 at 10:53 AM, Anastasia Yendiki <ayendiki@nmr.mgh.harvard.edu> wrote: Hi Alan - Glad to hear that you have an interesting finding! Can you describe what type of thing you want to visualize a bit more? If it's not on the surface, freeview will more likely do the trick rather than qdec. a.y On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia and FreeSurfers: Is it possible to model Tracula data on Qdec? I have some interesting findings in FA and AD between two groups that I am hoping to visually represent on a single brain. Any advice would be deeply appreciated. thank you, Alan The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Alan - Sorry, tracula doesn't do voxel-based analyses, only tract-based.
a.y
On Fri, 13 Sep 2013, Alan Francis wrote:
Hi Anastasia:
Yes I generated the left CST on a single subject using the Freeview -tv option. But my boss wanted to know if it was possible to do a voxelwise group analysis and show mean differences on a single inflated brain.
thanks,
Alan
On Fri, Sep 13, 2013 at 11:43 AM, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:
I see, then it's an ROI analysis, where the tract is the ROI. Isn't it sufficient for you to visualize the tracts in an example subject with the -tv option in freeview? What would you like to do beyond that? On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia: I am looking at Average AD in these tracts. thanks, Alan On Fri, Sep 13, 2013 at 11:37 AM, Anastasia Yendiki <ayendiki@nmr.mgh.harvard.edu> wrote: Hi Alan - Are you looking at average AD over the whole tract, or AD along the tract? a.y On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia: Thanks for your quick reply. We would like to look at the left and right Cortico-spinal tract AD between the groups. Also left and right ATR AD if possible. thanks again, Alan On Fri, Sep 13, 2013 at 10:53 AM, Anastasia Yendiki <ayendiki@nmr.mgh.harvard.edu> wrote: Hi Alan - Glad to hear that you have an interesting finding! Can you describe what type of thing you want to visualize a bit more? If it's not on the surface, freeview will more likely do the trick rather than qdec. a.y On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia and FreeSurfers: Is it possible to model Tracula data on Qdec? I have some interesting findings in FA and AD between two groups that I am hoping to visually represent on a single brain. Any advice would be deeply appreciated. thank you, Alan The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Thanks Anastasia.
On Fri, Sep 13, 2013 at 1:37 PM, Anastasia Yendiki < ayendiki@nmr.mgh.harvard.edu> wrote:
Hi Alan - Sorry, tracula doesn't do voxel-based analyses, only tract-based.
a.y
On Fri, 13 Sep 2013, Alan Francis wrote:
Hi Anastasia:
Yes I generated the left CST on a single subject using the Freeview -tv option. But my boss wanted to know if it was possible to do a voxelwise group analysis and show mean differences on a single inflated brain.
thanks,
Alan
On Fri, Sep 13, 2013 at 11:43 AM, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:
I see, then it's an ROI analysis, where the tract is the ROI. Isn't it sufficient for you to visualize the tracts in an example subject with the -tv option in freeview? What would you like to do beyond that? On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia: I am looking at Average AD in these tracts. thanks, Alan On Fri, Sep 13, 2013 at 11:37 AM, Anastasia Yendiki <ayendiki@nmr.mgh.harvard.edu> wrote: Hi Alan - Are you looking at average AD over the whole tract, or AD along the tract? a.y On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia: Thanks for your quick reply. We would like to look at the left and right Cortico-spinal tract AD between the groups. Also left and right ATR AD if possible. thanks again, Alan On Fri, Sep 13, 2013 at 10:53 AM, Anastasia Yendiki <ayendiki@nmr.mgh.harvard.edu> wrote: Hi Alan - Glad to hear that you have an interesting finding! Can you describe what type of thing you want to visualize a bit more? If it's not on the surface, freeview will more likely do the trick rather than qdec. a.y On Fri, 13 Sep 2013, Alan Francis wrote: Hi Anastasia and FreeSurfers: Is it possible to model Tracula data on Qdec? I have some interesting findings in FA and AD between two groups that I am hoping to visually represent on a single brain. Any advice would be deeply appreciated. thank you, Alan The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Alan Francis -
Anastasia Yendiki