External Email - Use Caution
Hi:
I am trying to convert CT images from DICOM to MGZ using mri_convert. When running it shows the message "INFO: applying rescale intercept and slope based on (0028,1052) (0028,1053). If you do not want this, then set FS_RESCALE_DICOM to 0 and rerun."
Where can I find the FS_RESCALE_DICOM option ?
Sincerely,
Gonzalo Rojas Costa
Hi Gonzalo,
FS_RESCALE_DICOM is set through environment variable.
1. if you are using bash, export FS_RESCALE_DICOM=0 2. if you are using tsch, set FS_RESCALE_DICOM=0
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Gonzalo Rojas Costa Sent: Monday, February 13, 2023 1:14 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] CT conversion from DICOM to MGZ
External Email - Use Caution Hi:
I am trying to convert CT images from DICOM to MGZ using mri_convert. When running it shows the message "INFO: applying rescale intercept and slope based on (0028,1052) (0028,1053). If you do not want this, then set FS_RESCALE_DICOM to 0 and rerun."
Where can I find the FS_RESCALE_DICOM option ?
Sincerely,
Gonzalo Rojas Costa
freesurfer@nmr.mgh.harvard.edu