External Email - Use Caution
Dear FreeSurfer community:
I have a subject from IXI dataset that ends with errors. I don´t know what to do to prevent it from happening and to have succesful run.
Sincerely, Andrade.
Hi Andrade
have you checked the Talairach transform? The recon logfile shows:
TalAviQA: 0.90309 z-score: -17 WARNING: Talairach QA check failed! z-score of -17 is <= threshold of -9\n \nManual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string.
cheers Bruce On Sat, 1 Dec 2018, Renew Andrade wrote:
External Email - Use CautionDear FreeSurfer community:
I have a subject from IXI dataset that ends with errors. I don´t know what to do to prevent it from happening and to have succesful run.
Sincerely, Andrade.
freesurfer@nmr.mgh.harvard.edu