Hi Christine

does it look ok in the aseg?

Bruce On Wed, 30 Nov 2011, Christine Smith wrote:

Hello,

I have a subject whose entorhinal cortex on one side of the brain is being excluded from the white matter surface and the pial surface. The cortex is included in the brain mask.

I have tried a number of approaches to fix the problem but none have worked. First, I set some control points in the white matter band of the entorhinal cortex to encourage the white matter to extend out there. That didnt work. Next, edited the wm.mgz mask and drew in the white matter in that area. That didn't work either. The yellow white matter surface line still does not extend out where it should. The pial surface line skirts the white matter line as it cuts through the entorhinal cortex.

Is there any other option for this subject? I wish I could pull the red pial line out to the right place...

Thanks,

Christine _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer