That in and of itself is probably not problematic as it is in the medial wall. But I'm a little worried that the subcortical segmentation is not accurate. Can I take a look at the subject? You can get it to me with:

From the linux command line,

Create the file you want to upload, eg, cd $SUBJECTS_DIR tar cvfz subject.tar.gz ./subject Now log into our anonymous FTP site: ftp surfer.nmr.mgh.harvard.edu It will ask you for a user name: use "anonymous" (no quotes) It will ask you for a password: use "anonymous" (no quotes) cd transfer/incoming binary put subject.tar.gz Send an email that the file has been and the name of the file.

On 1/8/2020 4:30 PM, Rachel Hoel wrote:

External Email - Use Caution

Dear Freesurfer Developers,

In one of our recons I'm seeing that the right lateral ventricle is partially excluded from the white matter and pial surfaces (screenshots attached). The aseg.mgz has no label for the omitted region. We are using v6.0.

What is recommended for fixing this type of error? Filling in the wm.mgz where the omission is?

Thanks in advance,

Rachel

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