Hi all,
Upon creating my .nii file from my Siemens MPRAGE data using mri_convert, and opening nii file in freesurfer, I notice that the sagital view has the wrong orientation.
What I mean is that on teh scanner I can see nose on left side of image, but on freesurfer I see nose on right. I am using mri-convert with no options.
Is thsi normal or am doing anything wrong?
Thanks in advance.
That is correct, the nose should be pointing to the right when you look at the sag view in tkmedit.
doug
On 4/27/11 12:14 AM, Saad Ramadan wrote:
Hi all, Upon creating my .nii file from my Siemens MPRAGE data using mri_convert, and opening nii file in freesurfer, I notice that the sagital view has the wrong orientation. What I mean is that on teh scanner I can see nose on left side of image, but on freesurfer I see nose on right. I am using mri-convert with no options. Is thsi normal or am doing anything wrong? Thanks in advance.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
that's normal. freeview will also display what it thinks the anatomical axes are, so in the nose direction you should see a little A for anterior (for example) On Wed, 27 Apr 2011, Saad Ramadan wrote:
Hi all,
Upon creating my .nii file from my Siemens MPRAGE data using mri_convert, and opening nii file in freesurfer, I notice that the sagital view has the wrong orientation.
What I mean is that on teh scanner I can see nose on left side of image, but on freesurfer I see nose on right. I am using mri-convert with no options.
Is thsi normal or am doing anything wrong?
Thanks in advance.
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Douglas Greve -
Saad Ramadan