Hi: To register the freesurfer, I use the command "gedit .licence" and paste my registration information to it in ubuntu. It does works.
However, I got a trouble when using MAC laptop. I don't know how to create the .licence file. I have got the registration information for MAC.
I will be very appreciated if you can give me some clues and answers.
Thank u very much.
Hi, I am sorry to re-post this problem, but I cannot find the source of my problem:
During sampling the feat data to fsaverage using for example: mris_preproc --target fsaverage --hemi lh --out 3runs/lh.cope1.mgh --iv run1.feat/stats/cope1.nii run1.feat/reg/freesurfer/anat2exf.register.dat --iv run2.feat/stats/#cope1.nii run2.feat/reg/freesurfer/anat2exf.register.dat --iv run3.feat/stats/cope1.nii run3.feat/reg/freesurfer/anat2exf.register.dat
For one subject I get in the log file: ... mri_surf2surf --srcsubject 1250 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval 3runs/tmp.mris_preproc.13727/1250.1.mgh --sval 3runs/tmp.mris_preproc.13727/subjsurfvals.mgh --noreshape --no-cortex ERROR: dimension inconsistency in source data Number of surface vertices = 132315 Number of value vertices = 132299 ...
Does it mean that the recon-all files are incompatible with the functional images? Can this stem from some manual editing of pial surface? Where should I search to spot the problem?
Thank you a lot, Aga
freesurfer@nmr.mgh.harvard.edu
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119829640 -
Agnieszka Burzynska