External Email - Use Caution
Dear I want to save output of freeview as attach file. Which is a segmentation after thick colourmap ad lookptable and thick outline. Best regards
sorry, can you clarify what you mean? Isn't the attachment already a saved output of freeview? I don't understand what you are trying to do
cheers Bruce On Sat, 21 Dec 2019, Nader Razmara wrote:
External Email - Use Caution
Dear I want to save output of freeview as attach file. Which is a segmentation after thick colourmap ad lookptable and thick outline. Best regards
External Email - Use Caution
Thanks a lot. As yuo see in attach i have opened an aseg.mgz which i have made with recon-all. In freeview i thicked lookup table and outline. As you see this is appearance of what i did. Now i want to save this as a new mgz file which when i opened it with other image softwares i have this apearanse. Is it possibe? Best regards Nader Neuroimaging phd student
On 21 Dec 2019 18:36, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
sorry, can you clarify what you mean? Isn't the attachment already a saved output of freeview? I don't understand what you are trying to do
cheers Bruce On Sat, 21 Dec 2019, Nader Razmara wrote:
External Email - Use Caution
Dear I want to save output of freeview as attach file. Which is a segmentation after thick colourmap ad lookptable and thick outline. Best regards
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
oh, you want to save a volume that has just the borders of each structure labeled? I'm not sure we have anything that can do that. Ruopeng: can freeview?
cheers Bruce
On Sat, 21 Dec 2019, Nader Razmara wrote:
External Email - Use Caution
Thanks a lot.As yuo see in attach i have opened an aseg.mgz which i have made with recon-all. In freeview i thicked lookup table and outline. As you see this is appearance of what i did. Now i want to save this as a new mgz file which when i opened it with other image softwares i have this apearanse. Is it possibe? Best regards Nader Neuroimaging phd student
On 21 Dec 2019 18:36, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote: sorry, can you clarify what you mean? Isn't the attachment already a saved output of freeview? I don't understand what you are trying to do
cheers Bruce On Sat, 21 Dec 2019, Nader Razmara wrote: > > External Email - Use Caution > > Dear I want to save output of freeview as attach file. Which is a > segmentation after thick colourmap ad lookptable and thick outline. > Best regards > >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear Bruce Thats correct. Regards Nader
On 21 Dec 2019 18:49, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
oh, you want to save a volume that has just the borders of each structure labeled? I'm not sure we have anything that can do that. Ruopeng: can freeview?
cheers Bruce
On Sat, 21 Dec 2019, Nader Razmara wrote:
External Email - Use CautionThanks a lot.As yuo see in attach i have opened an aseg.mgz which i have
made with recon-all. In freeview i thicked lookup table and outline. As
you
see this is appearance of what i did. Now i want to save this as a new mgz file which when i opened it with other image softwares i have this apearanse. Is it possibe? Best regards Nader Neuroimaging phd student
On 21 Dec 2019 18:36, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote: sorry, can you clarify what you mean? Isn't the attachment already a saved output of freeview? I don't understand what you are trying to do
cheers Bruce On Sat, 21 Dec 2019, Nader Razmara wrote: > > External Email - Use Caution > > Dear I want to save output of freeview as attach file. Which is a > segmentation after thick colourmap ad lookptable and thick outline. > Best regards > >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Nader,
Freeview can't do that currently. But I will add an option for it.
Best, Ruopeng
On 12/21/19 10:19 AM, Bruce Fischl wrote:
oh, you want to save a volume that has just the borders of each structure labeled? I'm not sure we have anything that can do that. Ruopeng: can freeview?
cheers Bruce
On Sat, 21 Dec 2019, Nader Razmara wrote:
External Email - Use Caution
Thanks a lot.As yuo see in attach i have opened an aseg.mgz which i have made with recon-all. In freeview i thicked lookup table and outline. As you see this is appearance of what i did. Now i want to save this as a new mgz file which when i opened it with other image softwares i have this apearanse. Is it possibe? Best regards Nader Neuroimaging phd student
On 21 Dec 2019 18:36, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote: sorry, can you clarify what you mean? Isn't the attachment already a saved output of freeview? I don't understand what you are trying to do
cheers Bruce On Sat, 21 Dec 2019, Nader Razmara wrote:
> > External Email - Use Caution > > Dear I want to save output of freeview as attach file. Which is a > segmentation after thick colourmap ad lookptable and thick outline. > Best regards > >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Hi Roupeng Can i hope you do it soon. It is an important part of my phd thesis. Best regards and best wishes Nader
On 23 Dec 2019 19:24, "Ruopeng Wang" rpwang@nmr.mgh.harvard.edu wrote:
Hi Nader,
Freeview can't do that currently. But I will add an option for it.
Best, Ruopeng
On 12/21/19 10:19 AM, Bruce Fischl wrote:
oh, you want to save a volume that has just the borders of each structure labeled? I'm not sure we have anything that can do that. Ruopeng: can freeview?
cheers Bruce
On Sat, 21 Dec 2019, Nader Razmara wrote:
External Email - Use CautionThanks a lot.As yuo see in attach i have opened an aseg.mgz which i have made with recon-all. In freeview i thicked lookup table and outline. As you see this is appearance of what i did. Now i want to save this as a new mgz file which when i opened it with other image softwares i have this apearanse. Is it possibe? Best regards Nader Neuroimaging phd student
On 21 Dec 2019 18:36, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote: sorry, can you clarify what you mean? Isn't the attachment already a saved output of freeview? I don't understand what you are trying to do
cheers Bruce On Sat, 21 Dec 2019, Nader Razmara wrote: > > External Email - Use Caution > > Dear I want to save output of freeview as attach file. Which is a > segmentation after thick colourmap ad lookptable and thick outline. > Best regards > >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Nadar,
I’ve added a new volume filter called “Boundary” in menu Tools -> Volume Filters. You can apply it to your volume and then save volume as. Here is an instruction on how to update to the latest freeview: https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
Best, Ruopeng
On Dec 23, 2019, at 10:59 AM, Nader Razmara naderinst@gmail.com wrote:
External Email - Use CautionHi Roupeng Can i hope you do it soon. It is an important part of my phd thesis. Best regards and best wishes Nader
On 23 Dec 2019 19:24, "Ruopeng Wang" <rpwang@nmr.mgh.harvard.edu mailto:rpwang@nmr.mgh.harvard.edu> wrote: Hi Nader,
Freeview can't do that currently. But I will add an option for it.
Best, Ruopeng
On 12/21/19 10:19 AM, Bruce Fischl wrote:
oh, you want to save a volume that has just the borders of each structure labeled? I'm not sure we have anything that can do that. Ruopeng: can freeview?
cheers Bruce
On Sat, 21 Dec 2019, Nader Razmara wrote:
External Email - Use CautionThanks a lot.As yuo see in attach i have opened an aseg.mgz which i have made with recon-all. In freeview i thicked lookup table and outline. As you see this is appearance of what i did. Now i want to save this as a new mgz file which when i opened it with other image softwares i have this apearanse. Is it possibe? Best regards Nader Neuroimaging phd student
On 21 Dec 2019 18:36, "Bruce Fischl" <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote: sorry, can you clarify what you mean? Isn't the attachment already a saved output of freeview? I don't understand what you are trying to do
cheers Bruce On Sat, 21 Dec 2019, Nader Razmara wrote: > > External Email - Use Caution > > Dear I want to save output of freeview as attach file. Which is a > segmentation after thick colourmap ad lookptable and thick outline. > Best regards > >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear Ruopeng Thanks a lot for what you did. But I have installed and work with freesurfer Disk image 5.3 not freesurfer V6. Can i do this procedure to update freeview on it or i must install v6. Best regards and best wishes. Nader
On Tue, 24 Dec 2019, 19:09 Ruopeng Wang <rpwang@nmr.mgh.harvard.edu wrote:
Hi Nadar,
I’ve added a new volume filter called “Boundary” in menu Tools -> Volume Filters. You can apply it to your volume and then save volume as. Here is an instruction on how to update to the latest freeview: https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
Best, Ruopeng
On Dec 23, 2019, at 10:59 AM, Nader Razmara naderinst@gmail.com wrote:
External Email - Use CautionHi Roupeng Can i hope you do it soon. It is an important part of my phd thesis. Best regards and best wishes Nader
On 23 Dec 2019 19:24, "Ruopeng Wang" rpwang@nmr.mgh.harvard.edu wrote:
Hi Nader,
Freeview can't do that currently. But I will add an option for it.
Best, Ruopeng
On 12/21/19 10:19 AM, Bruce Fischl wrote:
oh, you want to save a volume that has just the borders of each structure labeled? I'm not sure we have anything that can do that. Ruopeng: can freeview?
cheers Bruce
On Sat, 21 Dec 2019, Nader Razmara wrote:
External Email - Use CautionThanks a lot.As yuo see in attach i have opened an aseg.mgz which i have made with recon-all. In freeview i thicked lookup table and outline. As you see this is appearance of what i did. Now i want to save this as a new mgz file which when i opened it with other image softwares i have this apearanse. Is it possibe? Best regards Nader Neuroimaging phd student
On 21 Dec 2019 18:36, "Bruce Fischl" fischl@nmr.mgh.harvard.edu
wrote:
sorry, can you clarify what you mean? Isn't the attachment already a saved output of freeview? I don't understand what you are trying to do cheers Bruce On Sat, 21 Dec 2019, Nader Razmara wrote: > > External Email - Use Caution > > Dear I want to save output of freeview as attach file. Which is a > segmentation after thick colourmap ad lookptable and thick outline. > Best regards > >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
You can go ahead and try it.
Ruopeng
On Dec 24, 2019, at 12:09 PM, Nader Razmara naderinst@gmail.com wrote:
External Email - Use CautionDear Ruopeng Thanks a lot for what you did. But I have installed and work with freesurfer Disk image 5.3 not freesurfer V6. Can i do this procedure to update freeview on it or i must install v6. Best regards and best wishes. Nader
On Tue, 24 Dec 2019, 19:09 Ruopeng Wang <rpwang@nmr.mgh.harvard.edu mailto:rpwang@nmr.mgh.harvard.edu wrote: Hi Nadar,
I’ve added a new volume filter called “Boundary” in menu Tools -> Volume Filters. You can apply it to your volume and then save volume as. Here is an instruction on how to update to the latest freeview: https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
Best, Ruopeng
On Dec 23, 2019, at 10:59 AM, Nader Razmara <naderinst@gmail.com mailto:naderinst@gmail.com> wrote:
External Email - Use CautionHi Roupeng Can i hope you do it soon. It is an important part of my phd thesis. Best regards and best wishes Nader
On 23 Dec 2019 19:24, "Ruopeng Wang" <rpwang@nmr.mgh.harvard.edu mailto:rpwang@nmr.mgh.harvard.edu> wrote: Hi Nader,
Freeview can't do that currently. But I will add an option for it.
Best, Ruopeng
On 12/21/19 10:19 AM, Bruce Fischl wrote:
oh, you want to save a volume that has just the borders of each structure labeled? I'm not sure we have anything that can do that. Ruopeng: can freeview?
cheers Bruce
On Sat, 21 Dec 2019, Nader Razmara wrote:
External Email - Use CautionThanks a lot.As yuo see in attach i have opened an aseg.mgz which i have made with recon-all. In freeview i thicked lookup table and outline. As you see this is appearance of what i did. Now i want to save this as a new mgz file which when i opened it with other image softwares i have this apearanse. Is it possibe? Best regards Nader Neuroimaging phd student
On 21 Dec 2019 18:36, "Bruce Fischl" <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote: sorry, can you clarify what you mean? Isn't the attachment already a saved output of freeview? I don't understand what you are trying to do
cheers Bruce On Sat, 21 Dec 2019, Nader Razmara wrote: > > External Email - Use Caution > > Dear I want to save output of freeview as attach file. Which is a > segmentation after thick colourmap ad lookptable and thick outline. > Best regards > >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear Ruopeng Thanks a lot. Thanks a lot. Best Regards and wishes Nader
On Tue, 24 Dec 2019, 21:27 Ruopeng Wang <rpwang@nmr.mgh.harvard.edu wrote:
You can go ahead and try it.
Ruopeng
On Dec 24, 2019, at 12:09 PM, Nader Razmara naderinst@gmail.com wrote:
External Email - Use CautionDear Ruopeng Thanks a lot for what you did. But I have installed and work with freesurfer Disk image 5.3 not freesurfer V6. Can i do this procedure to update freeview on it or i must install v6. Best regards and best wishes. Nader
On Tue, 24 Dec 2019, 19:09 Ruopeng Wang <rpwang@nmr.mgh.harvard.edu wrote:
Hi Nadar,
I’ve added a new volume filter called “Boundary” in menu Tools -> Volume Filters. You can apply it to your volume and then save volume as. Here is an instruction on how to update to the latest freeview: https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
Best, Ruopeng
On Dec 23, 2019, at 10:59 AM, Nader Razmara naderinst@gmail.com wrote:
External Email - Use CautionHi Roupeng Can i hope you do it soon. It is an important part of my phd thesis. Best regards and best wishes Nader
On 23 Dec 2019 19:24, "Ruopeng Wang" rpwang@nmr.mgh.harvard.edu wrote:
Hi Nader,
Freeview can't do that currently. But I will add an option for it.
Best, Ruopeng
On 12/21/19 10:19 AM, Bruce Fischl wrote:
oh, you want to save a volume that has just the borders of each structure labeled? I'm not sure we have anything that can do that. Ruopeng: can freeview?
cheers Bruce
On Sat, 21 Dec 2019, Nader Razmara wrote:
External Email - Use CautionThanks a lot.As yuo see in attach i have opened an aseg.mgz which i
have
made with recon-all. In freeview i thicked lookup table and outline. As you see this is appearance of what i did. Now i want to save this as a new mgz file which when i opened it with other image softwares i have this apearanse. Is it possibe? Best regards Nader Neuroimaging phd student
On 21 Dec 2019 18:36, "Bruce Fischl" fischl@nmr.mgh.harvard.edu
wrote:
sorry, can you clarify what you mean? Isn't the attachment already a saved output of freeview? I don't understand what you are trying to do cheers Bruce On Sat, 21 Dec 2019, Nader Razmara wrote: > > External Email - Use Caution > > Dear I want to save output of freeview as attach file. Which is a > segmentation after thick colourmap ad lookptable and thick outline. > Best regards > >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Nader Razmara -
Ruopeng Wang