Hi Mike,

try running the command by itself and look at why it does not work, maybe one of the files is missing or the path is wrong?

Best, Martin

On 06/21/2014 02:11 PM, Michael Kranz wrote:

Hi,

I'm having trouble figuring out following problem:

For one subject (out of 200), I get the following error (this error only persists for the right hemisphere-- left hemisphere works fine for this subject).

mris_label_calc intersect /SUBJECTS_DIR/sub2.long.subt/label/rh.cortex.label /SUBJECTS_DIR/subt/label/rh.long.cortex.label /SUBJECTS_DIR/subt/label/rh.long.cortex.label

ERROR -11 : mris_label_calc intersect did not work?

/subt is base and sub2 is second time point ./

Do you guys have any experience with this error and problems that it may have been caused by? I've tried re-running the longitudinal stream from scratch and the error still persists. I've visually checked the images and all segmentations were accurate.

Thanks, Mike Kranz

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer