In freeview, you can use :overlay_color=colorscale,settings maybe Ruopeng can weigh in on exactly what to set them to to get the colorwheel Are you also looking to have freeview snap pictures for you?
On 7/18/19 11:57 AM, Matthieu VANHOUTTE wrote:
External Email - Use Caution Sorry not to be precise on my answer.
I can easily open freeview to load overlay on surface and configure the color scale to "Color Wheel".
However to create pictur es for article I automatize the creation of those pictures by scripting using tksurfer command line. There are different options for this command line but I didn't find any option to set the color scale to which I want "Color Wheel".
Is there any tool existing allowing to use "Color Wheel" color scale by scripting ?
Best,
Matthieu
On 18/07/2019 17:51, Greve, Douglas N.,Ph.D. wrote:
I don't know what you mean by "stay graphical". can you explain? What is the tksurfer option to load the colorwheel?
On 7/18/19 11:47 AM, Matthieu VANHOUTTE wrote:
External Email - Use Caution Hi Douglas, Bruce,
Freeview is really nice but stay graphical. When I want to create composed snapshots of surface overlays I use tksurfer with command lines to create these.
I looked at tksurferfv with command lines but didn't see where is the option to set color scale to "Color Wheel"?
Best,
Matthieu
On 18/07/2019 17:22, Greve, Douglas N.,Ph.D. wrote:
There is a program called tksurferfv that runs freeview but takes all the same command line args as tksurfer
On 7/18/19 10:56 AM, Bruce Fischl wrote:
Hi Matthieu
tksurfer has been deprecated for years. Is there a reason you can't switch to freeview?
cheers Bruce On Thu, 18 Jul 2019, Matthieu VANHOUTTE wrote:
External Email - Use Caution
Dear experts,
I use tksurfer in command line to generate multiple faces images of overlays on the fsaverage surface.
Graphically it is possible via freeview to set the color scale of the overlay with "Color Wheel" setting. I searched into the tksufer command help but didn' t find any option to specify this color scale. Doas anyone know how to deal with it by command lines ?
Best regards,
Matthieu
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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All my script is based on tksurfer derived commande. Is this possible to parametrize freeview by command lines with as many options than tksurfer, and then save snap in one script?
Please give me some information on how to set properly "Color Wheel" Color scale.
Best, Matthieu
Le jeu. 18 juil. 2019 à 20:45, Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> a écrit :
In freeview, you can use :overlay_color=colorscale,settings maybe Ruopeng can weigh in on exactly what to set them to to get the colorwheel Are you also looking to have freeview snap pictures for you?
On 7/18/19 11:57 AM, Matthieu VANHOUTTE wrote:
External Email - Use Caution Sorry not to be precise on my answer.
I can easily open freeview to load overlay on surface and configure the color scale to "Color Wheel".
However to create pictur es for article I automatize the creation of those pictures by scripting using tksurfer command line. There are different options for this command line but I didn't find any option to set the color scale to which I want "Color Wheel".
Is there any tool existing allowing to use "Color Wheel" color scale by scripting ?
Best,
Matthieu
On 18/07/2019 17:51, Greve, Douglas N.,Ph.D. wrote:
I don't know what you mean by "stay graphical". can you explain? What is the tksurfer option to load the colorwheel?
On 7/18/19 11:47 AM, Matthieu VANHOUTTE wrote:
External Email - Use Caution Hi Douglas, Bruce,
Freeview is really nice but stay graphical. When I want to create composed snapshots of surface overlays I use tksurfer with command lines to create these.
I looked at tksurferfv with command lines but didn't see where is the option to set color scale to "Color Wheel"?
Best,
Matthieu
On 18/07/2019 17:22, Greve, Douglas N.,Ph.D. wrote:
There is a program called tksurferfv that runs freeview but takes all the same command line args as tksurfer
On 7/18/19 10:56 AM, Bruce Fischl wrote:
Hi Matthieu
tksurfer has been deprecated for years. Is there a reason you can't switch to freeview?
cheers Bruce On Thu, 18 Jul 2019, Matthieu VANHOUTTE wrote:
> External Email - Use Caution > > Dear experts, > > I use tksurfer in command line to generate multiple faces images of > overlays on the fsaverage surface. > > Graphically it is possible via freeview to set the color scale of > the > overlay with "Color Wheel" setting. I searched into the tksufer > command > help but didn' t find any option to specify this color scale. Doas > anyone know how to deal with it by command lines ? > > Best regards, > > Matthieu > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Greve, Douglas N.,Ph.D. -
Matthieu Vanhoutte