fsaverage is already part of the distribution. I don't understand from your email what the problem is. doug

On 10/21/2013 10:03 AM, carina@van-vlodrop.de wrote:

Hi Doug,

I have already run:

recon-all -s subject -qcache -target avgsubject for each subject

Is it the same file?

I am not sure if the brain is really created or if there is a problem in uploading the brain in qdec.

Is it possible to get the fsaverage brain from freesurfer to check the cause of the problem?

Thank you

Carina

...

----- Ursprüngliche Nachricht ----- Von: Douglas Greve Gesendet: 28.09.13 17:46 Uhr An: freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] Problem in final analysis

Hi Carina, run

recon-all -s subject -qcache

for each subject and this will create the file

doug

On 9/28/13 5:37 AM, carina@van-vlodrop.de wrote:

Dear freesurfer community, we are conducting cortical-thickness
analysis using freesurfer-4.4.0 and have been experiencing some
problems with the final analysis steps. We are using the qdec.
Uploading of the data table has been successful. When we try to
use the “Analyze” command (design) in the qdec, we get the
following error message: Error in Analyze: Couldn’t open file
/data/projects/oertelmatura/Neurodegeneration/AJ83/surf/lh.thickness.fwhm10.fsaverage.mgh
Obviously, the file was never created during preprocessing. We
wonder, how to create dir/lh.thickness.fwhm10.fsaverage.mgh and
would be very grateful for your comments. Yours sincerely, Carina
$ bugr FREESURFER_HOME: /apps/prod/i486/freesurfer-4.4.0 Build
stamp: freesurfer-Linux-centos4-stable-pub-v4.4.0 Debian version:
5.0.6 Kernel info: Linux 2.6.27.39- 1 –ql-beowulf i686 $ which
surfer -> /apps/prod/i486/freesurfer-4.4.0/bin/freesurfer Used
command: qdec/design/Analyze Error message: Error in Analyze:
Couldn’t open file
/data/projects/oertelmatura/Neurodegeneration/AJ83/surf/lh.thikness.fwhm10.fsaverage.mgh



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