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Hi there
This might be a very silly question but I actually cannot find the answer in the email archive:
Assuming I have loaded a label onto fsaverage in Freeview and want to get the MNI305 coordinate of that labelled vertex, am I simply using the x,y,z in brackets in the panel? I attach a photo of what I mean.
Best wishes Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
External Email - Use Caution
Hi there
Still waiting for an answer to this!
Thanks! Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
---------- Forwarded message ---------- From: Trisanna Sprung-Much trisanna.sprung-much@mail.mcgill.ca Date: Thu, Jul 26, 2018 at 7:35 PM Subject: vertex MNI305 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Hi there
This might be a very silly question but I actually cannot find the answer in the email archive:
Assuming I have loaded a label onto fsaverage in Freeview and want to get the MNI305 coordinate of that labelled vertex, am I simply using the x,y,z in brackets in the panel? I attach a photo of what I mean.
Best wishes Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
Hi Trisanna
sorry, I think this came during Doug's vacation. I believe that those coords in fsaverage are MNI ones, but he can confirm
cheers Bruce
On Tue, 31 Jul 2018, Trisanna Sprung-Much wrote:
External Email - Use Caution
Hi there Still waiting for an answer to this!
Thanks! Trisanna -- Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology
---------- Forwarded message ---------- From: Trisanna Sprung-Much trisanna.sprung-much@mail.mcgill.ca Date: Thu, Jul 26, 2018 at 7:35 PM Subject: vertex MNI305 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Hi there This might be a very silly question but I actually cannot find the answer in the email archive: Assuming I have loaded a label onto fsaverage in Freeview and want to get the MNI305 coordinate of that labelled vertex, am I simply using the x,y,z in brackets in the panel? I attach a photo of what I mean.
Best wishes Trisanna -- Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology
External Email - Use Caution
thanks Bruce! I will wait for Doug's response.
Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
On Tue, Jul 31, 2018 at 10:41 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Trisanna
sorry, I think this came during Doug's vacation. I believe that those coords in fsaverage are MNI ones, but he can confirm
cheers Bruce
On Tue, 31 Jul 2018, Trisanna Sprung-Much wrote:
External Email - Use CautionHi there Still waiting for an answer to this!
Thanks! Trisanna -- Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology
---------- Forwarded message ---------- From: Trisanna Sprung-Much trisanna.sprung-much@mail.mcgill.ca Date: Thu, Jul 26, 2018 at 7:35 PM Subject: vertex MNI305 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Hi there This might be a very silly question but I actually cannot find the answer in the email archive: Assuming I have loaded a label onto fsaverage in Freeview and want to get the MNI305 coordinate of that labelled vertex, am I simply using the x,y,z in brackets in the panel? I attach a photo of what I mean.
Best wishes Trisanna -- Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
External Email - Use Caution
Hi there
Could I get a confirmation on this?
best Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
On Tue, Jul 31, 2018 at 10:41 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Trisanna
sorry, I think this came during Doug's vacation. I believe that those coords in fsaverage are MNI ones, but he can confirm
cheers Bruce
On Tue, 31 Jul 2018, Trisanna Sprung-Much wrote:
External Email - Use CautionHi there Still waiting for an answer to this!
Thanks! Trisanna -- Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology
---------- Forwarded message ---------- From: Trisanna Sprung-Much trisanna.sprung-much@mail.mcgill.ca Date: Thu, Jul 26, 2018 at 7:35 PM Subject: vertex MNI305 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Hi there This might be a very silly question but I actually cannot find the answer in the email archive: Assuming I have loaded a label onto fsaverage in Freeview and want to get the MNI305 coordinate of that labelled vertex, am I simply using the x,y,z in brackets in the panel? I attach a photo of what I mean.
Best wishes Trisanna -- Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Actually, I think this is a better question for Ruopeng (cc'ed)
On 07/31/2018 10:16 AM, Trisanna Sprung-Much wrote:
External Email - Use Caution
Hi there
Still waiting for an answer to this!
Thanks! Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
---------- Forwarded message ---------- From: *Trisanna Sprung-Much* <trisanna.sprung-much@mail.mcgill.ca mailto:trisanna.sprung-much@mail.mcgill.ca> Date: Thu, Jul 26, 2018 at 7:35 PM Subject: vertex MNI305 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu>
Hi there
This might be a very silly question but I actually cannot find the answer in the email archive:
Assuming I have loaded a label onto fsaverage in Freeview and want to get the MNI305 coordinate of that labelled vertex, am I simply using the x,y,z in brackets in the panel? I attach a photo of what I mean.
Best wishes Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi there
Doug can you please confirm? Bruce said you would be the best to answer and I've got revisions that are due. Please see the image attached. In my manuscript I report the x,y,z next to the vertex number in Freeview for MNI coordinates (MNI305) of that vertex. These only different very slightly from the RAS and SurfaceRAS coordinates above the vertex number in the panel but I'd like confirmation I am reporting the correct x.y,z.
best Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
---------- Forwarded message --------- From: Trisanna Sprung-Much trisanna.sprung-much@mail.mcgill.ca Date: Thu, Jul 26, 2018 at 7:35 PM Subject: vertex MNI305 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Hi there
This might be a very silly question but I actually cannot find the answer in the email archive:
Assuming I have loaded a label onto fsaverage in Freeview and want to get the MNI305 coordinate of that labelled vertex, am I simply using the x,y,z in brackets in the panel? I attach a photo of what I mean.
Best wishes Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
I think the coordinate circled in the picture is the exact coordinate of the vertex, also in surface ras. The coordinate under "SurfaceRAS" is the coordinate of the current cursor location in surface ras. The slight difference is because the cursor is not exactly on the vertex, but close enough so that the vertex number is shown.
Best, Ruopeng
On 08/21/2018 10:10 AM, Trisanna Sprung-Much wrote:
External Email - Use Caution
Hi there
Doug can you please confirm? Bruce said you would be the best to answer and I've got revisions that are due. Please see the image attached. In my manuscript I report the x,y,z next to the vertex number in Freeview for MNI coordinates (MNI305) of that vertex. These only different very slightly from the RAS and SurfaceRAS coordinates above the vertex number in the panel but I'd like confirmation I am reporting the correct x.y,z.
best Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
---------- Forwarded message --------- From: *Trisanna Sprung-Much* <trisanna.sprung-much@mail.mcgill.ca mailto:trisanna.sprung-much@mail.mcgill.ca> Date: Thu, Jul 26, 2018 at 7:35 PM Subject: vertex MNI305 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu>
Hi there
This might be a very silly question but I actually cannot find the answer in the email archive:
Assuming I have loaded a label onto fsaverage in Freeview and want to get the MNI305 coordinate of that labelled vertex, am I simply using the x,y,z in brackets in the panel? I attach a photo of what I mean.
Best wishes Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
thanks Ruopeng for your speedy response! And this are indeed in MNI305? Bruce was fairly certain but I just wanted to confirm.
best Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
On Tue, Aug 21, 2018 at 11:13 AM Ruopeng Wang rpwang@nmr.mgh.harvard.edu wrote:
I think the coordinate circled in the picture is the exact coordinate of the vertex, also in surface ras. The coordinate under "SurfaceRAS" is the coordinate of the current cursor location in surface ras. The slight difference is because the cursor is not exactly on the vertex, but close enough so that the vertex number is shown.
Best, Ruopeng
On 08/21/2018 10:10 AM, Trisanna Sprung-Much wrote:
External Email - Use CautionHi there
Doug can you please confirm? Bruce said you would be the best to answer and I've got revisions that are due. Please see the image attached. In my manuscript I report the x,y,z next to the vertex number in Freeview for MNI coordinates (MNI305) of that vertex. These only different very slightly from the RAS and SurfaceRAS coordinates above the vertex number in the panel but I'd like confirmation I am reporting the correct x.y,z.
best Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
---------- Forwarded message --------- From: Trisanna Sprung-Much trisanna.sprung-much@mail.mcgill.ca Date: Thu, Jul 26, 2018 at 7:35 PM Subject: vertex MNI305 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Hi there
This might be a very silly question but I actually cannot find the answer in the email archive:
Assuming I have loaded a label onto fsaverage in Freeview and want to get the MNI305 coordinate of that labelled vertex, am I simply using the x,y,z in brackets in the panel? I attach a photo of what I mean.
Best wishes Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu