Dear FS experts
I run recon-all -long on a MacIntel Leopard and everything worked fine. When using the recon-all -long command on a Linux Machine (CentOS 32 bit) it runs untill the end ("recon-all finished without an error"), but there is an error.log file that is about 2 GB in size and it is too large to open.
But I recognized an odd behaviour never seen before (see attachment). This behaviour lasted for minimum half an hour and maybe is responsible for the larger error.log file.
Please help Thanks a lot Best regards Juergen
----------------------------------------------------------- Juergen Haenggi Ph.D. (Dr. des.) Division of Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi@psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website) -----------------------------------------------------------
Jurgen,
I think it comes from the fact that FS could not find some file. I had similar situation here a while ago, when I had almost full partition with FS data. FS created about 4GB logfile.
Just a guess, didn't you move the data from your mac to linux to be re-analyzed or finish the analysis? If FS tried to find a /FILE/ON/MAC, which has /ANOTHER/LOCATION/ON/LINUX this may be the cause.
Just my few cents,
Martin
On Friday 26 September 2008 08:15:47 Juergen Haenggi wrote:
Dear FS experts
I run recon-all -long on a MacIntel Leopard and everything worked fine. When using the recon-all -long command on a Linux Machine (CentOS 32 bit) it runs untill the end ("recon-all finished without an error"), but there is an error.log file that is about 2 GB in size and it is too large to open.
But I recognized an odd behaviour never seen before (see attachment). This behaviour lasted for minimum half an hour and maybe is responsible for the larger error.log file.
Please help Thanks a lot Best regards Juergen
Juergen Haenggi Ph.D. (Dr. des.) Division of Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi@psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
Juergen,
There is a bug in mri_segstats which causes these huge files. You will also want to get mris_wm_volume. You can get them here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/nicks/stable
Nick
On Fri, 2008-09-26 at 08:15 +0200, Juergen Haenggi wrote:
Dear FS experts
I run recon-all -long on a MacIntel Leopard and everything worked fine. When using the recon-all -long command on a Linux Machine (CentOS 32 bit) it runs untill the end ("recon-all finished without an error"), but there is an error.log file that is about 2 GB in size and it is too large to open.
But I recognized an odd behaviour never seen before (see attachment). This behaviour lasted for minimum half an hour and maybe is responsible for the larger error.log file.
Please help Thanks a lot Best regards Juergen
Juergen Haenggi Ph.D. (Dr. des.) Division of Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi@psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
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