if you export it as an annotation then all the labels will be combined in one file. I think you are probably editing the ?h.aparc.annot, so you could overwrite that one if you want. The correct mri_segstats command could then be found in the subject's recon-all.log or recon-all.cmd file in the scripts dir.

cheers Bruce

On Mon, 11 Jul 2011, Keefe, Helen L wrote:

Hi Bruce, Doug, and All:

Questions on a continuing problem:

When I run tksurfer, the caudalanteriorcingulate is invaded by the corpuscallosum.  I edited the boundary using the instructions at:  https://surfer.nmr.mgh.harvard.edu/fswiki/tksurfer_labeledit

I'm then instructed to "Save the annotation: File > Label > Export Annotation. Probably choose a new name rather than writing over an existing file"

I don't need a new name - I just need to save the labels for the caudalanteriorcingulate and the corpuscallosum, which both now look correct.  How/where do I do that?  Here are the files in the label dir:

lh.cortex.label lh.aparc.annot lh.aparc.a2009s.annot rh.cortex.label rh.aparc.annot aparc.annot.ctab rh.aparc.a2009s.annot aparc.annot.a2009s.ctab

Also -

I previously asked what I need to do after that to ensure accurate measurements. Bruce responded, "I don't think you need recon2 since you are just changing the aparc. I believe you can just run the aparc stats step, but I'll cc Doug who might know better."

Any advice on all this?

Thanks, Helen

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