External Email - Use Caution
Hello, brand new to this software and community so I apologize if this is a dumb question or if I’m asking it through the wrong channels. I understand that Freeview is just a visualizer for Freesurfer, but since I just want to use it to automatically segment brain MRIs for 3D modeling, I wondered if there was a way to do that within Freeview instead of working with it via the command line. Thank you!
Nope, you have to use the command line. If you have a T1weighted image, you can just recon-all -i t1w.mgz -s subject -all The aseg will be in subject/mri/aseg.mgz There are a few other options for this as well, like samseg --i t1w.mgz --o samsegdir The seg will be in samsegdir/seg.mgz Or you can synthseg --i t1w.mgz --o synthseg.mgz
On 5/16/2022 8:55 AM, R.J. Austerman wrote:
External Email - Use CautionHello, brand new to this software and community so I apologize if this is a dumb question or if I’m asking it through the wrong channels. I understand that Freeview is just a visualizer for Freesurfer, but since I just want to use it to automatically segment brain MRIs for 3D modeling, I wondered if there was a way to do that within Freeview instead of working with it via the command line. Thank you!
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Douglas N. Greve -
R.J. Austerman