Dear All
I meet a problem when I run the command mris_wm_volume to calculate the white matter volume for each hemisphere.
The error message is coplied here
mris_wm_volume mris_wm_volume: error while loading shared libraries: libstdc++.so.6:
cannot open shared object file: No such file or directory
Does any one know how to solve the problem? (My PC installed Suse9.3)
Many thanks in advance
Rhuang
Rhuang,
I'm guessing that you're using our Centos freesurfer distribution (type: cat $FREESURFER_HOME/build-stamp.txt to find out). You'll want to use our RedHat 9 freesurfer distribution with Suse9.3.
Nick
On Mon, 2007-05-14 at 17:05 +0200, Ruiwang Huang wrote:
Dear All
I meet a problem when I run the command mris_wm_volume to calculate the white matter volume for each hemisphere.
The error message is coplied here
mris_wm_volume mris_wm_volume: error while loading shared libraries: libstdc++.so.6:
cannot open shared object file: No such file or directory
Does any one know how to solve the problem? (My PC installed Suse9.3)
Many thanks in advance
Rhuang
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear Nick
Many thanks for your message.
Here is the output after my typing
cat $FREESURFER_HOME/build-stamp.txt freesurfer-Linux-rh9-stable-pub-v3.0.3
Do I need update the freesurfer on my PC?
Ruiwang
On Monday 14 May 2007 17:26, you wrote:
Rhuang,
I'm guessing that you're using our Centos freesurfer distribution (type: cat $FREESURFER_HOME/build-stamp.txt to find out). You'll want to use our RedHat 9 freesurfer distribution with Suse9.3.
Nick
On Mon, 2007-05-14 at 17:05 +0200, Ruiwang Huang wrote:
Dear All
I meet a problem when I run the command mris_wm_volume to calculate the white matter volume for each hemisphere.
The error message is coplied here
mris_wm_volume mris_wm_volume: error while loading shared libraries: libstdc++.so.6:
cannot open shared object file: No such file or directory
Does any one know how to solve the problem? (My PC installed Suse9.3)
Many thanks in advance
Rhuang
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Ruiwang,
It looks like you are already running what I thought would be the correct version (rh9 is redhat 9). Can you send me the output of this command?
ldd `which mris_wm_volume`
Nick
On Mon, 2007-05-14 at 17:43 +0200, Ruiwang Huang wrote:
Dear Nick
Many thanks for your message.
Here is the output after my typing
cat $FREESURFER_HOME/build-stamp.txt freesurfer-Linux-rh9-stable-pub-v3.0.3
Do I need update the freesurfer on my PC?
Ruiwang
On Monday 14 May 2007 17:26, you wrote:
Rhuang,
I'm guessing that you're using our Centos freesurfer distribution (type: cat $FREESURFER_HOME/build-stamp.txt to find out). You'll want to use our RedHat 9 freesurfer distribution with Suse9.3.
Nick
On Mon, 2007-05-14 at 17:05 +0200, Ruiwang Huang wrote:
Dear All
I meet a problem when I run the command mris_wm_volume to calculate the white matter volume for each hemisphere.
The error message is coplied here
mris_wm_volume mris_wm_volume: error while loading shared libraries: libstdc++.so.6:
cannot open shared object file: No such file or directory
Does any one know how to solve the problem? (My PC installed Suse9.3)
Many thanks in advance
Rhuang
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear Nick
Thanks a lot. Here is the output of ' ldd `which mris_wm_volume`
linux-gate.so.1 => (0xffffe000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x40019000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0x40038000) libz.so.1 => /lib/libz.so.1 (0x40088000) libcrypt.so.1 => /lib/libcrypt.so.1 (0x40099000) libstdc++.so.6 => not found libm.so.6 => /lib/tls/libm.so.6 (0x400eb000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x4010e000) libc.so.6 => /lib/tls/libc.so.6 (0x40116000) libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x4022f000) /lib/ld-linux.so.2 (0x40000000)
Any suggestions please?
Rhuang
On Monday 14 May 2007 17:53, Nick Schmansky wrote:
Ruiwang,
It looks like you are already running what I thought would be the correct version (rh9 is redhat 9). Can you send me the output of this command?
ldd `which mris_wm_volume`
Nick
On Mon, 2007-05-14 at 17:43 +0200, Ruiwang Huang wrote:
Dear Nick
Many thanks for your message.
Here is the output after my typing
cat $FREESURFER_HOME/build-stamp.txt freesurfer-Linux-rh9-stable-pub-v3.0.3
Do I need update the freesurfer on my PC?
Ruiwang
On Monday 14 May 2007 17:26, you wrote:
Rhuang,
I'm guessing that you're using our Centos freesurfer distribution (type: cat $FREESURFER_HOME/build-stamp.txt to find out). You'll want to use our RedHat 9 freesurfer distribution with Suse9.3.
Nick
On Mon, 2007-05-14 at 17:05 +0200, Ruiwang Huang wrote:
Dear All
I meet a problem when I run the command mris_wm_volume to calculate the white matter volume for each hemisphere.
The error message is coplied here
mris_wm_volume mris_wm_volume: error while loading shared libraries: libstdc++.so.6:
cannot open shared object file: No such file or directory
Does any one know how to solve the problem? (My PC installed Suse9.3)
Many thanks in advance
Rhuang
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Rhuang,
I just realized that mris_wm_volume is not part of the stable release, so you must have gotten the 'dev' release of it at some point in time, and probably got the Centos build of mris_wm_volume (which uses libstdc+ +.so.6).
So I have posted the 'rh9' build of mris_wm_volume here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/nicks/dev/linux
Be sure to 'chmod a+x mris_wm_volume' after you copy it to your $FREESURFER_HOME/bin.
Nick
On Mon, 2007-05-14 at 18:14 +0200, Ruiwang Huang wrote:
Dear Nick
Thanks a lot. Here is the output of ' ldd `which mris_wm_volume`
linux-gate.so.1 => (0xffffe000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x40019000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0x40038000) libz.so.1 => /lib/libz.so.1 (0x40088000) libcrypt.so.1 => /lib/libcrypt.so.1 (0x40099000) libstdc++.so.6 => not found libm.so.6 => /lib/tls/libm.so.6 (0x400eb000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x4010e000) libc.so.6 => /lib/tls/libc.so.6 (0x40116000) libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x4022f000) /lib/ld-linux.so.2 (0x40000000)Any suggestions please?
Rhuang
On Monday 14 May 2007 17:53, Nick Schmansky wrote:
Ruiwang,
It looks like you are already running what I thought would be the correct version (rh9 is redhat 9). Can you send me the output of this command?
ldd `which mris_wm_volume`
Nick
On Mon, 2007-05-14 at 17:43 +0200, Ruiwang Huang wrote:
Dear Nick
Many thanks for your message.
Here is the output after my typing
cat $FREESURFER_HOME/build-stamp.txt freesurfer-Linux-rh9-stable-pub-v3.0.3
Do I need update the freesurfer on my PC?
Ruiwang
On Monday 14 May 2007 17:26, you wrote:
Rhuang,
I'm guessing that you're using our Centos freesurfer distribution (type: cat $FREESURFER_HOME/build-stamp.txt to find out). You'll want to use our RedHat 9 freesurfer distribution with Suse9.3.
Nick
On Mon, 2007-05-14 at 17:05 +0200, Ruiwang Huang wrote:
Dear All
I meet a problem when I run the command mris_wm_volume to calculate the white matter volume for each hemisphere.
The error message is coplied here
> mris_wm_volume > mris_wm_volume: error while loading shared libraries: > libstdc++.so.6:
cannot open shared object file: No such file or directory
Does any one know how to solve the problem? (My PC installed Suse9.3)
Many thanks in advance
Rhuang
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear Nick
Thanks a lot. It works.
Have a very nice day
Rhuang
On Monday 14 May 2007 18:23, you wrote:
Rhuang,
I just realized that mris_wm_volume is not part of the stable release, so you must have gotten the 'dev' release of it at some point in time, and probably got the Centos build of mris_wm_volume (which uses libstdc+ +.so.6).
So I have posted the 'rh9' build of mris_wm_volume here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/nicks/dev/linux
Be sure to 'chmod a+x mris_wm_volume' after you copy it to your $FREESURFER_HOME/bin.
Nick
On Mon, 2007-05-14 at 18:14 +0200, Ruiwang Huang wrote:
Dear Nick
Thanks a lot. Here is the output of ' ldd `which mris_wm_volume`
linux-gate.so.1 => (0xffffe000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x40019000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0x40038000) libz.so.1 => /lib/libz.so.1 (0x40088000) libcrypt.so.1 => /lib/libcrypt.so.1 (0x40099000) libstdc++.so.6 => not found libm.so.6 => /lib/tls/libm.so.6 (0x400eb000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x4010e000) libc.so.6 => /lib/tls/libc.so.6 (0x40116000) libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x4022f000) /lib/ld-linux.so.2 (0x40000000)Any suggestions please?
Rhuang
On Monday 14 May 2007 17:53, Nick Schmansky wrote:
Ruiwang,
It looks like you are already running what I thought would be the correct version (rh9 is redhat 9). Can you send me the output of this command?
ldd `which mris_wm_volume`
Nick
On Mon, 2007-05-14 at 17:43 +0200, Ruiwang Huang wrote:
Dear Nick
Many thanks for your message.
Here is the output after my typing
cat $FREESURFER_HOME/build-stamp.txt freesurfer-Linux-rh9-stable-pub-v3.0.3
Do I need update the freesurfer on my PC?
Ruiwang
On Monday 14 May 2007 17:26, you wrote:
Rhuang,
I'm guessing that you're using our Centos freesurfer distribution (type: cat $FREESURFER_HOME/build-stamp.txt to find out). You'll want to use our RedHat 9 freesurfer distribution with Suse9.3.
Nick
On Mon, 2007-05-14 at 17:05 +0200, Ruiwang Huang wrote:
Dear All
I meet a problem when I run the command mris_wm_volume to calculate the white matter volume for each hemisphere.
The error message is coplied here
>> mris_wm_volume >> mris_wm_volume: error while loading shared libraries: >> libstdc++.so.6:
cannot open shared object file: No such file or directory
Does any one know how to solve the problem? (My PC installed Suse9.3)
Many thanks in advance
Rhuang
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.e
freesurfer@nmr.mgh.harvard.edu
-
Nick Schmansky -
Ruiwang Huang