Dear FS experts: How to check recon-all finished without any error? Sometime, there are showing no error message, however, when I running hippocampus subfield, it does not run.
thanks Lawrence Emory
Try checking your recon all.log in your scripts folder of the subject.
Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology
On Thu, Feb 2, 2017 at 1:52 PM, shi yao wang wangshiyao2009@gmail.com wrote:
Dear FS experts: How to check recon-all finished without any error? Sometime, there are showing no error message, however, when I running hippocampus subfield, it does not run.
thanks Lawrence Emory
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Dear Emroy,
I can also recommend using QA tools: https://surfer.nmr.mgh.harvard.edu/fswiki/QATools
You can edit the "default_status_log_xx" files in the folder and enter the steps that you're interested in.
Give it a try. Kind regards,
Sebastian
----- Original Message ----- From: "Trisanna Sprung-Much" trisanna.sprung-much@mail.mcgill.ca To: "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu Sent: Thursday, February 2, 2017 9:43:32 PM Subject: Re: [Freesurfer] How to check recon-all finished without any error
Try checking your recon all.log in your scripts folder of the subject.
Trisanna
freesurfer@nmr.mgh.harvard.edu