Hi List,
running freesurfer (centos 4 x86_64 3.0.2 pub full under SuSE 10.1 (had to upgrade from 9.3 because of stability issues)) I get the following Error while trying to run surf-sess (over ssh tunneled X11): surfer: ### GL window already open: can't open second % freeglut ERROR: Function <glutBitmapCharacter> called without first calling 'glitInit'. Interestingly both SuSE 9.3 and 10.1 use libglut.so.3.8.0 (freeglut). The exact command I ran from the mystudy directory is: surf-sess -sf sf -df df -analysis a3 -contrast c1_2 -hemi lh -surf inflated This exact command worked with SuSE 9.3 (all OSs 64bit linux). I am downloading 3.0.3 ATM to see whether this was fixed. If any of you have any advise I am keen to hear it ;).
Ahoi Sebastian
Hi List,
a short note, that might help, if I change surf-sess to "setenv colscalebar 0" the overlay is displayed ocer the surface, as with SuSE 9.3. The moment is press the coloro scale bar button tksurfer exits with the exact same error message as written below. One more thing I installed the latest nvidia driver package on the server in question short of the actual kernel module (as I use X over ssh, so the console machine uses its kernel module). I hope this helps to fix the problem.
ahoi Sebastian
On 30. Jun 2006, at 12:56 Uhr, Sebastian Moeller wrote:
Hi List,
running freesurfer (centos 4 x86_64 3.0.2 pub full under SuSE 10.1 (had to upgrade from 9.3 because of stability issues)) I get the following Error while trying to run surf-sess (over ssh tunneled X11): surfer: ### GL window already open: can't open second % freeglut ERROR: Function <glutBitmapCharacter> called without first calling 'glitInit'. Interestingly both SuSE 9.3 and 10.1 use libglut.so.3.8.0 (freeglut). The exact command I ran from the mystudy directory is: surf-sess -sf sf -df df -analysis a3 -contrast c1_2 -hemi lh -surf inflated This exact command worked with SuSE 9.3 (all OSs 64bit linux). I am downloading 3.0.3 ATM to see whether this was fixed. If any of you have any advise I am keen to hear it ;).
Ahoi Sebastian -- Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 01 62 - 3 25 45 59 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
Sebastian,
Hi! The 'glutInit' problem in tksurfer was fixed in v3.0.3, so let me know if that is truly fixed for you after your download completes.
Nick
Hi List,
a short note, that might help, if I change surf-sess to "setenv colscalebar 0" the overlay is displayed ocer the surface, as with SuSE 9.3. The moment is press the coloro scale bar button tksurfer exits with the exact same error message as written below. One more thing I installed the latest nvidia driver package on the server in question short of the actual kernel module (as I use X over ssh, so the console machine uses its kernel module). I hope this helps to fix the problem.
ahoi Sebastian
On 30. Jun 2006, at 12:56 Uhr, Sebastian Moeller wrote:
Hi List,
running freesurfer (centos 4 x86_64 3.0.2 pub full under SuSE 10.1 (had to upgrade from 9.3 because of stability issues)) I get the following Error while trying to run surf-sess (over ssh tunneled X11): surfer: ### GL window already open: can't open second % freeglut ERROR: Function <glutBitmapCharacter> called without first calling 'glitInit'. Interestingly both SuSE 9.3 and 10.1 use libglut.so.3.8.0 (freeglut). The exact command I ran from the mystudy directory is: surf-sess -sf sf -df df -analysis a3 -contrast c1_2 -hemi lh -surf inflated This exact command worked with SuSE 9.3 (all OSs 64bit linux). I am downloading 3.0.3 ATM to see whether this was fixed. If any of you have any advise I am keen to hear it ;).
Ahoi Sebastian -- Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 01 62 - 3 25 45 59 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
-- Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 01 62 - 3 25 45 59 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Nick,
On 30. Jun 2006, at 16:01 Uhr, Nick Schmansky wrote:
Sebastian,
Hi! The 'glutInit' problem in tksurfer was fixed in v3.0.3, so let me know if that is truly fixed for you after your download completes.
Mmh, unfortunately it also does not work with 3.0.3. Same error. BTW scuba also does not work for me, same error.
ahoi Sebastian
Nick
Hi List,
a short note, that might help, if I change surf-sess to "setenv colscalebar 0" the overlay is displayed ocer the surface, as with SuSE 9.3. The moment is press the coloro scale bar button tksurfer exits with the exact same error message as written below. One more thing I installed the latest nvidia driver package on the server in question short of the actual kernel module (as I use X over ssh, so the console machine uses its kernel module). I hope this helps to fix the problem.
ahoi Sebastian
On 30. Jun 2006, at 12:56 Uhr, Sebastian Moeller wrote:
Hi List,
running freesurfer (centos 4 x86_64 3.0.2 pub full under SuSE 10.1 (had to upgrade from 9.3 because of stability issues)) I get the following Error while trying to run surf-sess (over ssh tunneled X11): surfer: ### GL window already open: can't open second % freeglut ERROR: Function <glutBitmapCharacter> called without first calling 'glitInit'. Interestingly both SuSE 9.3 and 10.1 use libglut.so.3.8.0 (freeglut). The exact command I ran from the mystudy directory is: surf-sess -sf sf -df df -analysis a3 -contrast c1_2 -hemi lh -surf inflated This exact command worked with SuSE 9.3 (all OSs 64bit linux). I am downloading 3.0.3 ATM to see whether this was fixed. If any of you have any advise I am keen to hear it ;).
Ahoi Sebastian -- Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 01 62 - 3 25 45 59 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
-- Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 01 62 - 3 25 45 59 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Sebastian,
I was mistaken. The 'glutInit' fix has not yet propagated from our 'dev' build to the public 'stable' build. The fix will be included in the next bug-fix release (which will be next week, assuming testing is successful).
In the meantime, I've put a gzip'd tksurfer built for centos4 x86_64 that includes the glutInit call on the ftp site:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist
named:
tksurfer_centos4_x86_64.gz
Can you give it a try?
Thanks,
Nick
On Fri, 2006-06-30 at 21:25 +0200, Sebastian Moeller wrote:
Hi Nick,
On 30. Jun 2006, at 16:01 Uhr, Nick Schmansky wrote:
Sebastian,
Hi! The 'glutInit' problem in tksurfer was fixed in v3.0.3, so let me know if that is truly fixed for you after your download completes.
Mmh, unfortunately it also does not work with 3.0.3. Same error. BTW scuba also does not work for me, same error.
ahoi Sebastian
Nick
Hi List,
a short note, that might help, if I change surf-sess to "setenv colscalebar 0" the overlay is displayed ocer the surface, as with SuSE 9.3. The moment is press the coloro scale bar button tksurfer exits with the exact same error message as written below. One more thing I installed the latest nvidia driver package on the server in question short of the actual kernel module (as I use X over ssh, so the console machine uses its kernel module). I hope this helps to fix the problem.
ahoi Sebastian
On 30. Jun 2006, at 12:56 Uhr, Sebastian Moeller wrote:
Hi List,
running freesurfer (centos 4 x86_64 3.0.2 pub full under SuSE 10.1 (had to upgrade from 9.3 because of stability issues)) I get the following Error while trying to run surf-sess (over ssh tunneled X11): surfer: ### GL window already open: can't open second % freeglut ERROR: Function <glutBitmapCharacter> called without first calling 'glitInit'. Interestingly both SuSE 9.3 and 10.1 use libglut.so.3.8.0 (freeglut). The exact command I ran from the mystudy directory is: surf-sess -sf sf -df df -analysis a3 -contrast c1_2 -hemi lh -surf inflated This exact command worked with SuSE 9.3 (all OSs 64bit linux). I am downloading 3.0.3 ATM to see whether this was fixed. If any of you have any advise I am keen to hear it ;).
Ahoi Sebastian -- Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 01 62 - 3 25 45 59 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
-- Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 01 62 - 3 25 45 59 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Nick,
On 1. Jul 2006, at 00:12 Uhr, Nick Schmansky wrote:
Sebastian,
I was mistaken. The 'glutInit' fix has not yet propagated from our 'dev' build to the public 'stable' build. The fix will be included in the next bug-fix release (which will be next week, assuming testing is successful).
In the meantime, I've put a gzip'd tksurfer built for centos4 x86_64 that includes the glutInit call on the ftp site:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist
named:
tksurfer_centos4_x86_64.gz
Can you give it a try?
Works like a charm. The text display of the colorscalebar no longer enforces a tksurfer crash, joy.
Thank you very much.
Ahoi Sebastian
Thanks,
Nick
On Fri, 2006-06-30 at 21:25 +0200, Sebastian Moeller wrote:
Hi Nick,
On 30. Jun 2006, at 16:01 Uhr, Nick Schmansky wrote:
Sebastian,
Hi! The 'glutInit' problem in tksurfer was fixed in v3.0.3, so let me know if that is truly fixed for you after your download completes.
Mmh, unfortunately it also does not work with 3.0.3. Same error. BTW scuba also does not work for me, same error.
ahoi Sebastian
Nick
Hi List,
a short note, that might help, if I change surf-sess to "setenv colscalebar 0" the overlay is displayed ocer the surface, as with SuSE 9.3. The moment is press the coloro scale bar button tksurfer exits with the exact same error message as written below. One more thing I installed the latest nvidia driver package on the server in question short of the actual kernel module (as I use X over ssh, so the console machine uses its kernel module). I hope this helps to fix the problem.
ahoi Sebastian
On 30. Jun 2006, at 12:56 Uhr, Sebastian Moeller wrote:
Hi List,
running freesurfer (centos 4 x86_64 3.0.2 pub full under SuSE 10.1 (had to upgrade from 9.3 because of stability issues)) I get the following Error while trying to run surf-sess (over ssh tunneled X11): surfer: ### GL window already open: can't open second % freeglut ERROR: Function <glutBitmapCharacter> called without first calling 'glitInit'. Interestingly both SuSE 9.3 and 10.1 use libglut.so.3.8.0 (freeglut). The exact command I ran from the mystudy directory is: surf-sess -sf sf -df df -analysis a3 -contrast c1_2 -hemi lh -surf inflated This exact command worked with SuSE 9.3 (all OSs 64bit linux). I am downloading 3.0.3 ATM to see whether this was fixed. If any of you have any advise I am keen to hear it ;).
Ahoi Sebastian -- Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 01 62 - 3 25 45 59 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
-- Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 01 62 - 3 25 45 59 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Nick Schmansky -
Sebastian Moeller