Hi AJ,

yes, you'll need to manually fill them at the moment if they are not labeled as lesion or white matter hypointensity in the aseg. We are working on tools for doing this automatically, but they are not ready for primetime yet.

cheers Bruce On Thu, 6 Oct 2011, Adil Javed wrote:

Hi, Is there any way in tkmedit or freeview to set T1 lesions to background value or to exclude them before recon-all is run so that these lesions do not get misclassified?

Thanks,

AJ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer