Hi Qi - Is /Studies/*/DTI/dmrirc_subject a single file or multiple files? What are the contents of that file?

a.y

On Fri, 6 May 2016, Zeng, Qi wrote:

Hi,

I am running dti data with trac-all. I followed the command:

trac-all -prep -c /Studies/*/DTI/dmrirc_subject

but it exited with error "Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension."

Before. there is another post about similar problem

https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-February/027802.h...

Dr. Yendiki suggested it could be because missing defined B0 in the dmrirc, but new version wouldn't need this (5.3, a new version?). If so, where can I obtain the B0 data? Can I compute from DICOM like nifti and bval, bvec?

Best,

Qi