Does it run ok if you don't use -parallel?

On 3/2/2020 6:16 AM, Ian wrote:

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Hi all.

I have a T1 scan which I run through recon-all with:

recon-all -all -parallel -subjid freesurfer

(after mksubjdirs etc)

On my office machine, recon-all completes successfully.

On a cloud machine (16GB of ram), it fails after about 4 hours.

I have attached the logs - the only immediate error I can see is "Cannot find rh.white.H".

Any advice would be much appreciated, thank you.

Ian

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*Ian Hardingham*

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