Hi Oscar

if you send us the file and the command line we'll see if we can replicate and fix.

cheers Bruce

On Wed, 8 May 2013, Oscar Esteban wrote:

Dear all, I am experiencing segfaults when trying to convert from nifti to mgz.

Ubuntu 13.04 Freesurfer 5.1, 5.2 and 5.3-BETA.

I tried to find the problem using ldd, gdb, etc. but there is no debug information. I tried to compile 5.3-BETA but it does not find libminc-dev (while it is installed)...

I think this is the same problem (related to the new libc in ubuntu 13.04) that those postedin https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-May/029581.html%C... du/pipermail/freesurfer/2013-January/027532.html and https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/201 3-May/029679.html.

I'm looking forward to helping, but since there is no debug information in the binaries and I'm stucked with compilation... I don't know what to do.

Best,

Oscar Esteban

-- Oscar Esteban PhD Student / Researcher

Biomedical Image Technologies (BIT), UPM ETSI Telecomunicación Lab. C203, Av. Complutense s/n - E-28040 Madrid (Spain) +34 915 495 700 ext.4234

Signal Processing Laboratory (LTS5), EPFL-STI-IEL-LTS5 ELD 224 (Bâtiment ELD), Station 11, CH-1015 Lausanne, Switzerland