External Email - Use Caution
Dear Freesurfer experts,
it is possible to export the stats of subjects reconstructed with freesurfer v.6 using the HCP Multi Modal parcellation? (Glasser et al., 2016).
Thank you in advance.
Best regards,
External Email - Use Caution
What stats are you looking for?
Matt.
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Miguel Ángel Rivas Fernández miguelrivasfdez@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Wednesday, March 31, 2021 at 4:36 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Export stats: HCP Multi Modal parcellation
External Email - Use Caution
Dear Freesurfer experts,
it is possible to export the stats of subjects reconstructed with freesurfer v.6 using the HCP Multi Modal parcellation? (Glasser et al., 2016).
Thank you in advance.
Best regards,
-- Miguel Ángel Rivas Fernández
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
External Email - Use Caution
Hello Glasser,
In addition to freesurfer's asegstats2table, I would be interested in volume, cortical thickness and area of the HCP atlas (please, see attached .csv file). Other software (e.g CAT12 http://secure-web.cisco.com/1COAdbRtDckHN6yiHBswwxyVsNqxiQs4J0BIS3hCQNJzehplVAuaKl0ugaaaCSeAfNzGdiJpsvU6rvCBU9qIhWpNEmuB5E_ojQBwSRyr9qaSyv5oU0ed91aiW7flrQXvoPLoIyDuKczkUZI6P9NtmVQQqy01bFfwg_qZ8BES-sVkfG4hnppkEYdZb_dXubwS-Xt-QLigkXU9P3ZcpEIZB1hUvLLXtw-RM99oapY7Dm8XYjdgD9PM7R654BuszY4iuqGBnbLgZEA4VGHPlQJsk9A/http%3A%2F%2Fwww.neuro.uni-jena.de%2Fcat12-html%2Fcat_methods_RBM.html%23FS_HCP) allows exporting these measurements in HCP parcellation but I would like to know if it is possible with MRI data processed un FS.v6
Thank you in advance.
Best regards, #
El mié., 31 mar. 2021 15:28, Glasser, Matthew glasserm@wustl.edu escribió:
External Email - Use CautionWhat stats are you looking for?
Matt.
*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Miguel Ángel Rivas Fernández miguelrivasfdez@gmail.com *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Date: *Wednesday, March 31, 2021 at 4:36 AM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] Export stats: HCP Multi Modal parcellation
External Email - Use Caution *Dear Freesurfer experts,
it is possible to export the stats of subjects reconstructed with freesurfer v.6 using the HCP Multi Modal parcellation? (Glasser et al., 2016).
Thank you in advance.
Best regards,
--
*Miguel Ángel Rivas Fernández*
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1zrZ5NgwlmYyTyG0sGwBn4QgIqRsDKmXsWOeLE3T6NKGEKH...
External Email - Use Caution
It might be necessary to resample the atlas to the native mesh surfaces and convert it to the .annot file format from GIFTI. The former can be done using these instructions to get to fsaverage and then presumably FreeSurfer has a tool to get it to the native mesh and the latter with mris_convert:
https://secure-web.cisco.com/14YUuLKxR8nqmyOxrwK7DZrs4RQGGbNtr7w49dQj1Ij4Zka...
Matt.
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Miguel Ángel Rivas Fernández miguelrivasfdez@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Wednesday, March 31, 2021 at 8:58 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Export stats: HCP Multi Modal parcellation
External Email - Use Caution Hello Glasser,
In addition to freesurfer's asegstats2table, I would be interested in volume, cortical thickness and area of the HCP atlas (please, see attached .csv file). Other software (e.g CAT12http://secure-web.cisco.com/1COAdbRtDckHN6yiHBswwxyVsNqxiQs4J0BIS3hCQNJzehplVAuaKl0ugaaaCSeAfNzGdiJpsvU6rvCBU9qIhWpNEmuB5E_ojQBwSRyr9qaSyv5oU0ed91aiW7flrQXvoPLoIyDuKczkUZI6P9NtmVQQqy01bFfwg_qZ8BES-sVkfG4hnppkEYdZb_dXubwS-Xt-QLigkXU9P3ZcpEIZB1hUvLLXtw-RM99oapY7Dm8XYjdgD9PM7R654BuszY4iuqGBnbLgZEA4VGHPlQJsk9A/http%3A%2F%2Fwww.neuro.uni-jena.de%2Fcat12-html%2Fcat_methods_RBM.html%23FS_HCP) allows exporting these measurements in HCP parcellation but I would like to know if it is possible with MRI data processed un FS.v6
Thank you in advance.
Best regards, #
El mié., 31 mar. 2021 15:28, Glasser, Matthew <glasserm@wustl.edumailto:glasserm@wustl.edu> escribió:
External Email - Use Caution What stats are you looking for?
Matt.
From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Miguel Ángel Rivas Fernández <miguelrivasfdez@gmail.commailto:miguelrivasfdez@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Wednesday, March 31, 2021 at 4:36 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Export stats: HCP Multi Modal parcellation
External Email - Use Caution
Dear Freesurfer experts,
it is possible to export the stats of subjects reconstructed with freesurfer v.6 using the HCP Multi Modal parcellation? (Glasser et al., 2016).
Thank you in advance.
Best regards,
-- Miguel Ángel Rivas Fernández
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1D3RUPNr22Aomw-x2Nwhwkir2Jl3SGeTIK6hkmCI518aAyq...https://secure-web.cisco.com/1zrZ5NgwlmYyTyG0sGwBn4QgIqRsDKmXsWOeLE3T6NKGEKHoICs0g131f8SZqVQ9ipaWG2fl0iCv8_kq0zGE1aLTDbKq872D46BHHxMF91NDp6UksZOMoNeV1aAkCwsrjyKTDlnlqE2GeYcUDQDJFMf0qBKOkBGanibW1T4xs3c8yBL1Sj2W7ZCKUI5PQd-vUsf1mIQll5eyexTepf0DAnjkzMfhVdtRDNpW38Z8cpCNpspWzfNDFy6EA-GSXnwl3oBg_9YlXcN3Mw9iUJpZmKA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
freesurfer@nmr.mgh.harvard.edu
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Glasser, Matthew -
Miguel Ángel Rivas Fernández