Hi everyone, Thanks for all your answers Bruce, Matt and Antonin.
Matt, may I ask you when do you think that a freesurfer6-compliant version of the pipeline will be available ?
Best regards,
Bastien
On 3/13/17, 9:40 PM, "Bruce Fischl" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of fis...@nmr.mgh.harvard.edu> wrote:
Hi Matt
To state without qualification that "6.0 has some regressions as far as surface placement" is incorrect. We quantified its test-retest reliability, accuracy and power to detect disease effects and all were improved relative to 5.3. We tested V6 on hundreds of datasets across an array of pathologies and different MR sequences, field strengths and scanners. We visually inspected dozens of brains multiple times in the process of improving accuracy and robustness. I can believe that on Wash U HCP data there could be some specific issues, but to imply that V6 is generally less accurate is simply incorrect.
cheers Bruce
On Mon, 13 Mar 2017, Matt Glasser wrote:
Not yet. We are hoping FreeSurfer 6.1 will work nicely with the HCP Pipelines. For now version 6.0 has some regressions as far as surface placement goes and there are also some adaptations we need to make to the pipelines.
Peace,
Matt.
From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of CAGNA Bastien bastien.ca...@univ-amu.fr Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Monday, March 13, 2017 at 7:21 AM To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Can we use fressurfer 6 with the Human connectome project's pipeline ?
Dear freesurfer experts,
I'm wondering if it's possible to run the human connetome project's minimal processing pipeline using freesurfer 6 ?
Does it require some update of the pipeline or is there anybody that have already enjoyed the new freesurfer version with this pipeline ?
Thank you for your attention and your help,
Bastien Cagna
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
With FreeSurfer V6.1.
Peace,
Matt.
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of CAGNA Bastien bastien.CAGNA@univ-amu.fr Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Tuesday, March 14, 2017 at 11:32 AM To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Can we use fressurfer 6 with the Human connectome project's pipeline ?
Hi everyone, Thanks for all your answers Bruce, Matt and Antonin.
Matt, may I ask you when do you think that a freesurfer6-compliant version of the pipeline will be available ?
Best regards,
Bastien
On 3/13/17, 9:40 PM, "Bruce Fischl" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of fis...@nmr.mgh.harvard.edu> wrote:
Hi Matt
To state without qualification that "6.0 has some regressions as far as surface placement" is incorrect. We quantified its test-retest reliability, accuracy and power to detect disease effects and all were improved relative to 5.3. We tested V6 on hundreds of datasets across an array of pathologies and different MR sequences, field strengths and scanners. We visually inspected dozens of brains multiple times in the process of improving accuracy and robustness. I can believe that on Wash U HCP data there could be some specific issues, but to imply that V6 is generally less accurate is simply incorrect.
cheers Bruce
On Mon, 13 Mar 2017, Matt Glasser wrote:
Not yet. We are hoping FreeSurfer 6.1 will work nicely with the HCP Pipelines. For now version 6.0 has some regressions as far as surface placement goes and there are also some adaptations we need to make to the pipelines.
Peace,
Matt.
From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of CAGNA Bastien bastien.ca...@univ-amu.fr Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Monday, March 13, 2017 at 7:21 AM To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Can we use fressurfer 6 with the Human connectome project's pipeline ?
Dear freesurfer experts,
I'm wondering if it's possible to run the human connetome project's minimal processing pipeline using freesurfer 6 ?
Does it require some update of the pipeline or is there anybody that have already enjoyed the new freesurfer version with this pipeline ?
Thank you for your attention and your help,
Bastien Cagna
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
CAGNA Bastien -
Matt Glasser