Hello there,

I am just getting started with learning the ways of FreeSurfer. I am hoping you can help explain how (and if) FreeSurfer can give me the information I need.

I want to use FS's segmentation to better label optical properties in the head for optical reconstructions. Does FS output the coordinates and labels for the segmented volume (gray matter, white matter, csf)? Also good would be the affine transform so it can be inverted to put the coordinates of the segmented and labelled nodes (voxels?) back into native space.

I am performing our head segmentation and optical analysis in MATLAB.

Any help supplied is greatly appreciated. Many thanks! Adam

Adam T. Eggebrecht, Ph.D. Dept. of Radiology Washington University School of Medicine St. Louis, MO 314-362-6942

The material in this message is private and may contain Protected Healthcare Information (PHI). If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.