can you cc the list so that others can help? Have you looked for the file:
~/.tchsrc
it won't show up in ls unless you specify the -a option (all I think) as the dot files are hidden by default.
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hi, I am using Ubuntu 12.04 and using tcsh computer specs are core i7 3.6ghz with 32 gb ram
Thank you
Best Regards, Muhammad Naveed Iqbal Qureshi
On 11-Aug-2013, at 10:20 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Naveed
what kind of computer are you using? The .cshrc would be in your home directory. Do you know what shell you are running? Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello,
I am unable to find the .tcshrc files. Where can I find it.
I am unable to follow this process as stated on the website.
Alternately, the resource file for the shell can be configured to source the file automatically each time the shell is started. In the home directory of the user who will be running FreeSurfer binaries, edit the file .cshrc if C-shell will be used, the .tcshrc for enhanced C-shell, the .bashrc file for Bash, and .profile for sh, to include the previous two lines (which setenv FREESURFER_HOME, and then source the SetUpFreeSurfer.csh(or sh) script).
Best Regards, Naveed
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
sometimes this file might be missing, so I would create it. you can go in the same directory where the .bashrc file is located, and create the new file:
vi .tcshrc
press "s", type the FreeSurfer configuration data, press "escape", press ":wq"
and you got the file.
now when you open the terminal and type tcsh the configuration should appear.
best, Alex.
Le 11/8 10:17, Bruce Fischl a écrit :
can you cc the list so that others can help? Have you looked for the file:
~/.tchsrc
it won't show up in ls unless you specify the -a option (all I think) as the dot files are hidden by default.
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hi, I am using Ubuntu 12.04 and using tcsh computer specs are core i7 3.6ghz with 32 gb ram
Thank you
Best Regards, Muhammad Naveed Iqbal Qureshi
On 11-Aug-2013, at 10:20 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Naveed
what kind of computer are you using? The .cshrc would be in your home directory. Do you know what shell you are running? Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello,
I am unable to find the .tcshrc files. Where can I find it.
I am unable to follow this process as stated on the website.
Alternately, the resource file for the shell can be configured to source the file automatically each time the shell is started. In the home directory of the user who will be running FreeSurfer binaries, edit the file .cshrc if C-shell will be used, the .tcshrc for enhanced C-shell, the .bashrc file for Bash, and .profile for sh, to include the previous two lines (which setenv FREESURFER_HOME, and then source the SetUpFreeSurfer.csh(or sh) script).
Best Regards, Naveed
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hello
I have checked in the home directory and I am only able to find .bashrc in it. Do I need to install and support package for tcsh?
Regards, Naveed
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, August 11, 2013 7:17 AM To: Muhammad Naveed Iqbal Qureshi Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Setting up enviornment variable permenantly
can you cc the list so that others can help? Have you looked for the file:
~/.tchsrc
it won't show up in ls unless you specify the -a option (all I think) as the dot files are hidden by default.
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hi, I am using Ubuntu 12.04 and using tcsh computer specs are core i7 3.6ghz with 32 gb ram
Thank you
Best Regards, Muhammad Naveed Iqbal Qureshi
On 11-Aug-2013, at 10:20 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu
wrote:
Hi Naveed
what kind of computer are you using? The .cshrc would be in your home
directory. Do you know what shell you are running?
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello,
I am unable to find the .tcshrc files. Where can I find it.
I am unable to follow this process as stated on the website.
Alternately, the resource file for the shell can be configured to source the file automatically each time the shell is started. In the home directory of the user who will be running FreeSurfer binaries, edit the file .cshrc if C-shell will be used, the .tcshrc for enhanced C-shell, the .bashrc file for Bash, and .profile for sh, to include the previous two lines (which setenv FREESURFER_HOME, and then
source the SetUpFreeSurfer.csh(or sh) script).
Best Regards, Naveed
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the
sender and properly dispose of the e-mail.
you said you are using tcsh, right? Try creating a .tcshrc in your home dir and see if the commands in it get executed
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello
I have checked in the home directory and I am only able to find .bashrc in it. Do I need to install and support package for tcsh?
Regards, Naveed
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, August 11, 2013 7:17 AM To: Muhammad Naveed Iqbal Qureshi Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Setting up enviornment variable permenantly
can you cc the list so that others can help? Have you looked for the file:
~/.tchsrc
it won't show up in ls unless you specify the -a option (all I think) as the dot files are hidden by default.
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hi, I am using Ubuntu 12.04 and using tcsh computer specs are core i7 3.6ghz with 32 gb ram
Thank you
Best Regards, Muhammad Naveed Iqbal Qureshi
On 11-Aug-2013, at 10:20 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu
wrote:
Hi Naveed
what kind of computer are you using? The .cshrc would be in your home
directory. Do you know what shell you are running?
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello,
I am unable to find the .tcshrc files. Where can I find it.
I am unable to follow this process as stated on the website.
Alternately, the resource file for the shell can be configured to source the file automatically each time the shell is started. In the home directory of the user who will be running FreeSurfer binaries, edit the file .cshrc if C-shell will be used, the .tcshrc for enhanced C-shell, the .bashrc file for Bash, and .profile for sh, to include the previous two lines (which setenv FREESURFER_HOME, and then
source the SetUpFreeSurfer.csh(or sh) script).
Best Regards, Naveed
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the
sender and properly dispose of the e-mail.
Yes that's true I am using tcsh but I cannot find .tcshrc anywhere. Can you please tell me this process to create .tcshrc in more detail as my knowledge about linux is in infancy stage now :) Thank you.
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, August 11, 2013 8:05 AM To: Muhammad Naveed Iqbal Qureshi Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Setting up enviornment variable permenantly
you said you are using tcsh, right? Try creating a .tcshrc in your home dir and see if the commands in it get executed
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello
I have checked in the home directory and I am only able to find .bashrc in it. Do I need to install and support package for tcsh?
Regards, Naveed
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, August 11, 2013 7:17 AM To: Muhammad Naveed Iqbal Qureshi Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Setting up enviornment variable permenantly
can you cc the list so that others can help? Have you looked for the file:
~/.tchsrc
it won't show up in ls unless you specify the -a option (all I think) as the dot files are hidden by default.
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hi, I am using Ubuntu 12.04 and using tcsh computer specs are core i7 3.6ghz with 32 gb ram
Thank you
Best Regards, Muhammad Naveed Iqbal Qureshi
On 11-Aug-2013, at 10:20 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu
wrote:
Hi Naveed
what kind of computer are you using? The .cshrc would be in your home
directory. Do you know what shell you are running?
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello,
I am unable to find the .tcshrc files. Where can I find it.
I am unable to follow this process as stated on the website.
Alternately, the resource file for the shell can be configured to source the file automatically each time the shell is started. In the home directory of the user who will be running FreeSurfer binaries, edit the file .cshrc if C-shell will be used, the .tcshrc for enhanced C-shell, the .bashrc file for Bash, and .profile for sh, to include the previous two lines (which setenv FREESURFER_HOME, and then
source the SetUpFreeSurfer.csh(or sh) script).
Best Regards, Naveed
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the
sender and properly dispose of the e-mail.
Hi,
Alex already told you how to do so-
sometimes this file might be missing, so I would create it. you can go in the same directory where the .bashrc file is located, and create the new file:
vi .tcshrc
press "s", type the FreeSurfer configuration data, press "escape", press ":wq"
and you got the file.
now when you open the terminal and type tcsh the configuration should appear.
Hth.
On Mon, August 12, 2013 3:13 am, Muhammad Naveed Iqbal Qureshi wrote:
Yes that's true I am using tcsh but I cannot find .tcshrc anywhere. Can you please tell me this process to create .tcshrc in more detail as my knowledge about linux is in infancy stage now :) Thank you.
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, August 11, 2013 8:05 AM To: Muhammad Naveed Iqbal Qureshi Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Setting up enviornment variable permenantly
you said you are using tcsh, right? Try creating a .tcshrc in your home dir and see if the commands in it get executed
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello
I have checked in the home directory and I am only able to find .bashrc in it. Do I need to install and support package for tcsh?
Regards, Naveed
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, August 11, 2013 7:17 AM To: Muhammad Naveed Iqbal Qureshi Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Setting up enviornment variable permenantly
can you cc the list so that others can help? Have you looked for the file:
~/.tchsrc
it won't show up in ls unless you specify the -a option (all I think) as the dot files are hidden by default.
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hi, I am using Ubuntu 12.04 and using tcsh computer specs are core i7 3.6ghz with 32 gb ram
Thank you
Best Regards, Muhammad Naveed Iqbal Qureshi
On 11-Aug-2013, at 10:20 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu
wrote:
Hi Naveed
what kind of computer are you using? The .cshrc would be in your home
directory. Do you know what shell you are running?
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello,
I am unable to find the .tcshrc files. Where can I find it.
I am unable to follow this process as stated on the website.
Alternately, the resource file for the shell can be configured to source the file automatically each time the shell is started. In the home directory of the user who will be running FreeSurfer binaries, edit the file .cshrc if C-shell will be used, the .tcshrc for enhanced C-shell, the .bashrc file for Bash, and .profile for sh, to include the previous two lines (which setenv FREESURFER_HOME, and then
source the SetUpFreeSurfer.csh(or sh) script).
Best Regards, Naveed
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the
sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Muhammad, There are text editors that are much more user-friendly than vi! Try using nano, or ape, or one to the GUI editors like gedit, or nedit Jon
----- Original Message ----- From: "Shantanu Ghosh" shantanu@nmr.mgh.harvard.edu To: "Muhammad Naveed Iqbal Qureshi" mniqureshi@hotmail.com Cc: freesurfer@nmr.mgh.harvard.edu Sent: Sunday, August 11, 2013 10:21:06 AM Subject: Re: [Freesurfer] Setting up enviornment variable permenantly
Hi,
Alex already told you how to do so-
sometimes this file might be missing, so I would create it. you can go in the same directory where the .bashrc file is located, and create the new file:
vi .tcshrc
press "s", type the FreeSurfer configuration data, press "escape", press ":wq"
and you got the file.
now when you open the terminal and type tcsh the configuration should appear.
Hth.
On Mon, August 12, 2013 3:13 am, Muhammad Naveed Iqbal Qureshi wrote:
Yes that's true I am using tcsh but I cannot find .tcshrc anywhere. Can you please tell me this process to create .tcshrc in more detail as my knowledge about linux is in infancy stage now :) Thank you.
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, August 11, 2013 8:05 AM To: Muhammad Naveed Iqbal Qureshi Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Setting up enviornment variable permenantly
you said you are using tcsh, right? Try creating a .tcshrc in your home dir and see if the commands in it get executed
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello
I have checked in the home directory and I am only able to find .bashrc in it. Do I need to install and support package for tcsh?
Regards, Naveed
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, August 11, 2013 7:17 AM To: Muhammad Naveed Iqbal Qureshi Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Setting up enviornment variable permenantly
can you cc the list so that others can help? Have you looked for the file:
~/.tchsrc
it won't show up in ls unless you specify the -a option (all I think) as the dot files are hidden by default.
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hi, I am using Ubuntu 12.04 and using tcsh computer specs are core i7 3.6ghz with 32 gb ram
Thank you
Best Regards, Muhammad Naveed Iqbal Qureshi
On 11-Aug-2013, at 10:20 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu
wrote:
Hi Naveed
what kind of computer are you using? The .cshrc would be in your home
directory. Do you know what shell you are running?
Bruce
On Sun, 11 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:
Hello,
I am unable to find the .tcshrc files. Where can I find it.
I am unable to follow this process as stated on the website.
Alternately, the resource file for the shell can be configured to source the file automatically each time the shell is started. In the home directory of the user who will be running FreeSurfer binaries, edit the file .cshrc if C-shell will be used, the .tcshrc for enhanced C-shell, the .bashrc file for Bash, and .profile for sh, to include the previous two lines (which setenv FREESURFER_HOME, and then
source the SetUpFreeSurfer.csh(or sh) script).
Best Regards, Naveed
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the
sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Alex Hanganu -
Bruce Fischl -
Jon Wieser -
Muhammad Naveed Iqbal Qureshi -
Shantanu Ghosh