Chris, can you send the full recon-all.log file? doug

On 05/14/2013 10:24 PM, Chris Steward wrote:

Hi,

Tried running recon-all on two different linux systems and same error occurs in the mri_nu_correct.mni.log when running mri_convert on the nu1.mnc

ie.. . . . Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 64 CV of field change: 0.000946853 Outputting Volume: ............................................................

mri_convert ./tmp.mri_nu_correct.mni.24934/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.24934/nu1.mnc orig_nu.mgz --like orig.mgz --conform ncopen: filename "./tmp.mri_nu_correct.mni.24934/nu1.mnc": Not a netCDF file miopen: MINC package entry point Error opening ./tmp.mri_nu_correct.mni.24934/nu1.mnc mincRead(): error reading volume from file ./tmp.mri_nu_correct.mni.24934/nu1.mnc $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.24934/nu1.mnc...

Any help appreciated. Thanks, Chris

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