Looking to isolate and measure the thickness of certain brain cortex areas eg- broca's or sensory cortex On 8 March 2010 19:58, Allison Stevens astevens@nmr.mgh.harvard.edu wrote:
which labels are you looking for information on?
--
On Mon, 8 Mar 2010, Janani Dhinakaran wrote:
That command gives several options as suggestions and a format for typing
in the command. Following that format I write-
mris_anatomical_stats -a jan lh.pial mris_anatomical_stats -a jan lh tkmedit mris_anatomical_stats -a jan lh tkmedit mris_anatomical_stats -a jan lh pial tkmedit mris_anatomical_stats -a jan lh.mgz tkmedit mris_anatomical_stats -a jan tkmedit mris_anatomical_stats -a jan rawavg.mgz mris_anatomical_stats -a jan left mris_anatomical_stats -a jan left cortex.mgz mris_anatomical_stats -a jan left wm.mgz
None of the above give an annotation each label What should I have written?
On 8 March 2010 14:31, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Use mris_anatomical_stats
Janani Dhinakaran wrote:
Hello all,
Can anyone tell me the commands I'll need to use to extract and measure the cortical thickness and volume of certain regions of the brain?
thanks
I am the Sun, I know no darkness.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
you can look at our recent Cerebral Cortex paper and see what BAs we estimate
On Tue, 9 Mar 2010, Janani Dhinakaran wrote:
Looking to isolate and measure the thickness of certain brain cortex areas eg- broca's or sensory cortex On 8 March 2010 19:58, Allison Stevens astevens@nmr.mgh.harvard.edu wrote:
which labels are you looking for information on?
--
On Mon, 8 Mar 2010, Janani Dhinakaran wrote:
That command gives several options as suggestions and a format for typing
in the command. Following that format I write-
mris_anatomical_stats -a jan lh.pial mris_anatomical_stats -a jan lh tkmedit mris_anatomical_stats -a jan lh tkmedit mris_anatomical_stats -a jan lh pial tkmedit mris_anatomical_stats -a jan lh.mgz tkmedit mris_anatomical_stats -a jan tkmedit mris_anatomical_stats -a jan rawavg.mgz mris_anatomical_stats -a jan left mris_anatomical_stats -a jan left cortex.mgz mris_anatomical_stats -a jan left wm.mgz
None of the above give an annotation each label What should I have written?
On 8 March 2010 14:31, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Use mris_anatomical_stats
Janani Dhinakaran wrote:
Hello all,
Can anyone tell me the commands I'll need to use to extract and measure the cortical thickness and volume of certain regions of the brain?
thanks
I am the Sun, I know no darkness.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Janani Dhinakaran