try this instead PATH=/Applications/MATLAB_R2016a.app/bin/ export PATH

If it still doesn't work what is the output of `which matlab` hth d

On Fri, Jul 8, 2016 at 11:45 AM, Mahtab Farahbakhsh mfarahbakhsh1@sheffield.ac.uk wrote:

Dear FreeSurfer,

I am trying to calculate LGI for my images, but it seems like that it doesn't work. I have tried everything, but it's still giving me the same error.

I'm using FreeSurfer on a mac and my Matlab version is R2016a.

When I try to run "recon-all -s <subj> -localGI", I get this error: ERROR: Matlab is required to run mris_compute_lgi!.

I have done these so far: PATH=/Applications/MATLAB_R2016a.app/bin/matlab:$PATH export PATH

And my $PATH is: /Applications/MATLAB_R2016a.app/bin/matlab:/usr/local/fsl/bin:/Applications/freesurfer/bin:/Applications/freesurfer/fsfast/bin:/Applications/freesurfer/tktools:/usr/local/fsl/bin:/Applications/freesurfer/mni/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/opt/X11/bin: No such file or directory

And when I write getmatlab, I get this: ERROR: Cannot find matlab. Does not exist or is not in path.

My original Matlab is in the /Applications folder and I also have a folder named "matlab" in my FreeSurfer folder.

Would you please guide me what I should do?

Best Regards, Mahtab.

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.