Dear Bruce, I am using bash shell. Please see the further details below.

pc@RB:~$ echo $0 bash pc@RB:~$ echo $SHELL /bin/bash pc@RB:~$ ps -p "$$" PID TTY TIME CMD 3706 pts/1 00:00:00 bash

List of fails in the freesurfer folder;

/usr/local/freesurfer/average /usr/local/freesurfer/fsafd /usr/local/freesurfer/fsfast /usr/local/freesurfer/lib /usr/local/freesurfer/sessions /usr/local/freesurfer/tktools /usr/local/freesurfer/trctrain /usr/local/freesurfer/DefectLUT.txt /usr/local/freesurfer/FreeSurferColorLUT.txt /usr/local/freesurfer/FreeSurferEnv.csh /usr/local/freesurfer/LICENSE /usr/local/freesurfer/SetUpFreeSurfer.csh /usr/local/freesurfer/sources.csh /usr/local/freesurfer/sources.sh /usr/local/freesurfer/tkmeditParcColorsCMA /usr/local/freesurfer/VERSION /usr/local/freesurfer/WMParcStatsLUT.txt

You can notice that there is no SetUpFreeSurfer.sh files.

Details about my pc;

Ubuntu 16.04 LTS, 64 bit is installed. Running w8.1 via virtual box. Memory - 16GB ram Processor- Intel® Core™ i7-4790 CPU @ 3.60GHz × 8 Graphics - GeForce GT 610/PCIe/SSE2

Thanks Ramesh

On Fri, Apr 14, 2017 at 8:13 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

Hi Ramesh

you need to tell us what shell you are running.

cheers Bruce On Fri, 14 Apr 2017, Ramesh Babu wrote:

...

Dear Expert,

I am new member of this freesurfer mailing list. I just downloaded freesurfer package and installed in /usr/local/freesurfer.

I am trying to follow the command given in the freesurfer web page.

$> export FREESURFER_HOME=/usr/local/freesurfer $> source $FREESURFER_HOME/SetUpFreeSurfer.sh

But I could not figure out the .sh file in the freesurfer folder.

Instead th

...

ere is .csh file. Can I change it as

"$> source $FREESURFER_HOME/SetUpFreeSurfer.csh". Since I have started

using

...

Ubuntu recently, I am not not sure whether I can change it.

Need your help to install freesurfer in my pc. Thanks in advance

Ramesh

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