Dear Expert,
I am new member of this freesurfer mailing list. I just downloaded freesurfer package and installed in /usr/local/freesurfer.
I am trying to follow the command given in the freesurfer web page.
$> export FREESURFER_HOME=/usr/local/freesurfer $> source $FREESURFER_HOME/SetUpFreeSurfer.sh
But I could not figure out the .sh file in the freesurfer folder. Instead there is .csh file. Can I change it as
"$> source $FREESURFER_HOME/SetUpFreeSurfer.csh". Since I have started using Ubuntu recently, I am not not sure whether I can change it.
Need your help to install freesurfer in my pc.
Thanks in advance
Ramesh
Hi Ramesh
you need to tell us what shell you are running.
cheers Bruce On Fri, 14 Apr 2017, Ramesh Babu wrote:
Dear Expert,
I am new member of this freesurfer mailing list. I just downloaded freesurfer package and installed in /usr/local/freesurfer.
I am trying to follow the command given in the freesurfer web page.
$> export FREESURFER_HOME=/usr/local/freesurfer $> source $FREESURFER_HOME/SetUpFreeSurfer.sh
But I could not figure out the .sh file in the freesurfer folder. Instead th ere is .csh file. Can I change it as
"$> source $FREESURFER_HOME/SetUpFreeSurfer.csh". Since I have started using Ubuntu recently, I am not not sure whether I can change it.
Need your help to install freesurfer in my pc. Thanks in advance
Ramesh
Dear Bruce, I am using bash shell. Please see the further details below.
pc@RB:~$ echo $0 bash pc@RB:~$ echo $SHELL /bin/bash pc@RB:~$ ps -p "$$" PID TTY TIME CMD 3706 pts/1 00:00:00 bash
List of fails in the freesurfer folder;
/usr/local/freesurfer/average /usr/local/freesurfer/fsafd /usr/local/freesurfer/fsfast /usr/local/freesurfer/lib /usr/local/freesurfer/sessions /usr/local/freesurfer/tktools /usr/local/freesurfer/trctrain /usr/local/freesurfer/DefectLUT.txt /usr/local/freesurfer/FreeSurferColorLUT.txt /usr/local/freesurfer/FreeSurferEnv.csh /usr/local/freesurfer/LICENSE /usr/local/freesurfer/SetUpFreeSurfer.csh /usr/local/freesurfer/sources.csh /usr/local/freesurfer/sources.sh /usr/local/freesurfer/tkmeditParcColorsCMA /usr/local/freesurfer/VERSION /usr/local/freesurfer/WMParcStatsLUT.txt
You can notice that there is no SetUpFreeSurfer.sh files.
Details about my pc;
Ubuntu 16.04 LTS, 64 bit is installed. Running w8.1 via virtual box. Memory - 16GB ram Processor- Intel® Core™ i7-4790 CPU @ 3.60GHz × 8 Graphics - GeForce GT 610/PCIe/SSE2
Thanks Ramesh
On Fri, Apr 14, 2017 at 8:13 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Ramesh
you need to tell us what shell you are running.
cheers Bruce On Fri, 14 Apr 2017, Ramesh Babu wrote:
Dear Expert,
I am new member of this freesurfer mailing list. I just downloaded freesurfer package and installed in /usr/local/freesurfer.
I am trying to follow the command given in the freesurfer web page.
$> export FREESURFER_HOME=/usr/local/freesurfer $> source $FREESURFER_HOME/SetUpFreeSurfer.sh
But I could not figure out the .sh file in the freesurfer folder.
Instead th
ere is .csh file. Can I change it as
"$> source $FREESURFER_HOME/SetUpFreeSurfer.csh". Since I have started
using
Ubuntu recently, I am not not sure whether I can change it.
Need your help to install freesurfer in my pc. Thanks in advance
Ramesh
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