Hi freesurfer, I ?installed the package of freesurfer according to the intruction of freesurfer website. But when I checked whether it was installed successfully, I inputed?the commands following: 1)?tksurfer bert rh pial? Couldn't create output file .xdebug_tksurfersubject is bert
hemi is rh
surface is pial
surfer: current subjects dir: /usr/local/freesurfer/subjects
surfer: not in "scripts" dir ==> using cwd for session root
surfer: session root data dir ($session) set to:
surfer: /usr/local/freesurfer/bin
surfer: can't create file surfer.log in cwd
surfer: surfer.log created in /tmp
surfer: session root data dir ($session) reset to:
surfer: /tmp
Reading image info (/usr/local/freesurfer/subjects/bert)
Reading /usr/local/freesurfer/subjects/bert/mri/orig.mgz
surfer: Reading header info from /usr/local/freesurfer/subjects/bert/mri/orig.mgz 2) tkmedit bert orig.mgz?Couldn't create output file .xdebug_tkmedit
===================================
ERROR: A segfault has occurred. This is not your fault,
: but is most likely an unrecoverable error and has
: made the program unstable.
:
: Please send the contents of the file .xdebug_tkmedit
: that should be in this directory to freesurfer@nmr.mgh.harvard.edu
:
: Now exiting...
:
3) ?qdec?qdec.bin: error while loading shared libraries: libXss.so.1: cannot open shared object file: No such file or directory
yxk-ThinkStation-D30:/usr/local/freesurfer/bin> ?
Thus, I want to know the reason why these problems occurred, and the solution to these problems.
Thank you very much
Meng
Hi Meng
can you send us the contents of .xdebug_tkmedit? You'll need to start tkmedit from a directory that you have write access to
cheers Bruce
On Fri, 28 Mar 2014, limengsecret wrote:
Hi freesurfer,
I installed the package of freesurfer according to the intruction of freesurfer website. But when I checked whether it was installed successfully, I inputed the commands following:
1) tksurfer bert rh pial
Couldn't create output file .xdebug_tksurfersubject is bert hemi is rh surface is pial surfer: current subjects dir: /usr/local/freesurfer/subjects surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /usr/local/freesurfer/bin surfer: can't create file surfer.log in cwd surfer: surfer.log created in /tmp surfer: session root data dir ($session) reset to: surfer: /tmp Reading image info (/usr/local/freesurfer/subjects/bert) Reading /usr/local/freesurfer/subjects/bert/mri/orig.mgz surfer: Reading header info from /usr/local/freesurfer/subjects/bert/mri/orig.mgz 2) tkmedit bert orig.mgz Couldn't create output file .xdebug_tkmedit
=================================== ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to freesurfer@nmr.mgh.harvard.edu : : Now exiting... :
- qdec
qdec.bin: error while loading shared libraries: libXss.so.1: cannot open shared object file: No such file or directory yxk-ThinkStation-D30:/usr/local/freesurfer/bin>
Thus, I want to know the reason why these problems occurred, and the solution to these problems.
Thank you very much
Meng
freesurfer@nmr.mgh.harvard.edu