Hi all,
I am new to FS and I would like to know the usage of mri_convert to convert the results of FreeSurfer into the analyze format.
Thanks, Regards, Sameer Kumar Gottipati
mri_convert --help will print some usage instructions. basically just:
mri_convert somefile.mgz somefile.img
along with somefile.img, it will produce somefile.hdr and somefile.mat
On Tue, 2008-10-21 at 11:59 -0500, sameer kumar wrote:
Hi all,
I am new to FS and I would like to know the usage of mri_convert to convert the results of FreeSurfer into the analyze format.
Thanks, Regards, Sameer Kumar Gottipati
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Nick,
After I run recon-all, the files I get are not in mgz format and I would like to convert them into img format to view them in FSL view. How can I do that?
Thanks, Regards, Sameer
mri_convert file.mgz file.img should do the trick (or file.nii for nifti) On Thu, 23 Oct 2008, sameer kumar wrote:
Hi Nick,
After I run recon-all, the files I get are not in mgz format and I would like to convert them into img format to view them in FSL view. How can I do that?
Thanks, Regards, Sameer
Hi all,
It says .mgz file not found. I am new to FS so please help me out with this.
Thanks, Regards, Sameer
which ones? There are many, some of them are surfaces, which I don't think FSL can show, and some are volume that you could import into FSL (e.g. $SUBJECTS_DIR/$subject/mri/aseg.mgz, which is the whole-brain segmentation)
cheers, Bruce On Thu, 23 Oct 2008, sameer kumar wrote:
The output files of recon-all
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Nick Schmansky -
sameer kumar