External Email - Use Caution

Nevermind, I found in the source code of recon-all (line 180) that you have to specify the measure as '-measure area.pial' instead of '-measure area' in this case.

Sorry for the noise.

Tim

On October 22, 2018 at 11:23 AM ts+ml@rcmd.org wrote:

    External Email - Use Caution        

Dear FreeSurfer experts,

I would like to know how to (re-)generate the files 'lh.area.pial.fsaverage.mgh' and 'rh.area.pial.fsaverage.mgh' for a subject (in the surf/ dir).

I have tried the following: 1.) ensured that the source files, lh.area.pial and rh.area.pial, exist (under surf/). 2.) run: 'recon-all -s <subject> -qcache -measure area'

But this does not generate the expected files (only those for the white surface).

Any clues?

Tim