Hi Stephan,

This probably has to do with SIP being enabled, which blocks libraries stored in /usr. I would suggest disabling SIP and rerunning to see if that fixes things: http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protection-...

best, Andrew

On Nov 29, 2017, at 1:43 PM, steph <bick35@gmail.commailto:bick35@gmail.com> wrote:

Hello freesurfer experts,

when trying to run the local gyrification index I run into an error:

recon-all -s S01 -localGI ... reading surface from lh.pial... dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib

Abort ERROR: mris_fill -c -r 1 lh.pial /data/mri/freesurfer_subjects/S01/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz failed! Darwin mac.n.rr.comhttp://mac.n.rr.com 17.2.0 Darwin Kernel Version 17.2.0: Fri Sep 29 18:27:05 PDT 2017; root:xnu-4570.20.62~3/RELEASE_X86_64 x86_64

recon-all -s S01 exited with ERRORS at Wed Nov 29 13:25:48 EST 2017

I’m running this on a macBook, macOS High Sierra 10.13.1, with freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c

I tried different subjects, which caused similar errors.

Any ideas would be greatly appreciated, thank you!

Stephan _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer