External Email - Use Caution
Dear Freesurfer developers,
I am attempting to download the FsPalm patch (https://surfer.nmr.mgh.harvard.edu/fswiki/FsPalm https://surfer.nmr.mgh.harvard.edu/fswiki/FsPalm) using: the link described in the wiki - ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/PALM ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/PALM
However, there appears to be no directory at that location.
Please can you inform me how to install the FsPalm patch?
Many thanks
Hi
I downloaded it from this link.
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM/UserGuide
PALM/UserGuide - FslWiki - University of Oxfordhttps://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM/UserGuide fsl.fmrib.ox.ac.uk Downloading and installing PALM. To download latest packaged version, please click here.. Alternatively, visit the repository on GitHub.. PALM can run as a standalone command (i.e., executed directly from the command line/terminal), or inside Octave or Matlab.
Good luck
Mona
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Tom Parker tomparker59@gmail.com Sent: Friday, September 7, 2018 5:01:37 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] FsPalm patch
External Email - Use Caution
Dear Freesurfer developers,
I am attempting to download the FsPalm patch (https://surfer.nmr.mgh.harvard.edu/fswiki/FsPalm) using: the link described in the wiki - ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/PALM
However, there appears to be no directory at that location.
Please can you inform me how to install the FsPalm patch?
Many thanks
External Email - Use Caution
Hi Tom and Zahra,
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Tom Parker I am attempting to download the FsPalm patch (https://surfer.nmr.mgh.harvard.edu/fswiki/FsPalm)
On September 7, 2018 at 4:10 PM "Nasiriavanaki, Zahra" ZNASIRIAVANAKI@mgh.harvard.edu wrote: I downloaded it from this link. https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM/UserGuide
I think you are talking about 2 different things: PALM and FsPalm.
@Tom: On the problem with the FsPalm download: the FreeSurfer FTP server is currently unavailable due to a hard disk failure, see this recent message on this list:
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg59312.html
Just wait a bit.
Best,
I have recreated the patch. The only problem is that I don't quite remember what should be in it. The wiki says that there are 3 files to install, but I can only remember two. Tom, can you install those two files and run it and see what fails? That will tell me what the 3rd file is. thanks doug
On 9/7/18 11:30 AM, ts+ml@rcmd.org wrote:
External Email - Use CautionHi Tom and Zahra,
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Tom Parker I am attempting to download the FsPalm patch (https://surfer.nmr.mgh.harvard.edu/fswiki/FsPalm)
On September 7, 2018 at 4:10 PM "Nasiriavanaki, Zahra" ZNASIRIAVANAKI@mgh.harvard.edu wrote: I downloaded it from this link. https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM/UserGuide
I think you are talking about 2 different things: PALM and FsPalm.
@Tom: On the problem with the FsPalm download: the FreeSurfer FTP server is currently unavailable due to a hard disk failure, see this recent message on this list:
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg59312.html
Just wait a bit.
Best,
Actually, I figured it out. Everything is there now, just follow the instructions in the README.
On 9/7/18 11:48 AM, Douglas Greve wrote:
I have recreated the patch. The only problem is that I don't quite remember what should be in it. The wiki says that there are 3 files to install, but I can only remember two. Tom, can you install those two files and run it and see what fails? That will tell me what the 3rd file is. thanks doug
On 9/7/18 11:30 AM, ts+ml@rcmd.org wrote:
External Email - Use CautionHi Tom and Zahra,
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Tom Parker I am attempting to download the FsPalm patch (https://surfer.nmr.mgh.harvard.edu/fswiki/FsPalm)
On September 7, 2018 at 4:10 PM "Nasiriavanaki, Zahra" ZNASIRIAVANAKI@mgh.harvard.edu wrote: I downloaded it from this link. https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM/UserGuide
I think you are talking about 2 different things: PALM and FsPalm.
@Tom: On the problem with the FsPalm download: the FreeSurfer FTP server is currently unavailable due to a hard disk failure, see this recent message on this list:
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg59312.htmlJust wait a bit.
Best,
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Douglas Greve -
Nasiriavanaki, Zahra -
Tom Parker -
ts+ml＠rcmd.org