Hi Kim

You are missing some packages. https://help.ubuntu.com/community/CompilingEasyHowTo

You should install teh essential package for compiling in ubuntu by

sudo apt-get install build-essential and sudo apt-get install linux-libc-dev to get Linux headers in /usr/include/linux.

When building you should ensure that you meet the dependency before compiling.

Cheers

Knut J

On 10/18/2012 11:10 PM, Kim, Daniel wrote:

Hi Freesurfer users,

I'm trying to compile utils on my Ubuntu 10.04 64 bit machine and I am getting a considerable amount of error while compiling afni.c

• I am using gcc-4.4.3, g++-4.4.3 for compilers
• I have successfully installed VXL and MNI as per the developer's guide (I am not building any GUI apps)
• Had to add "-I/usr/src/linux-headers-2.6.32-43/include" under CFLAGS in utils/Makefile since without it, it would spit out error message saying it cannot find <linux/compiler.h>
• under the utils folder, "make" gives an error along the lines of "expected specifier-qualifier-list before 'size_t'" (attaching error log file)
• tried using older compiler gcc-3.3, g++3.3 but problems seems worse

I'm a bit stuck here and hoping that someone has had experience similar to this who can lend me some help?

Thanks very much!

cheers

Danny Kim Children's Brain Mapping Centre BC Children's Hospital

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