External Email - Use Caution
Dear All,
Hi. I have a question about the -i option for "recon-all". According to the explanation on the following page, the -i option specifies DICOM and NIfTI files, but is it OK to specify a mgz file with the -i option? https://secure-web.cisco.com/1UYHLpktzY4BG51M3Fy6Hmuwp2mf6dniSilXbYvOmS82Wjh...
I want to create a generic script file that calls NIfTI and mgz files as follows. recon-all -subject $SUBJECTS_ID -i $IMAGE_FILE -all
Thank you, ryo
Yes, that should be fine
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Ryosuke Hayashi Sent: Monday, October 31, 2022 6:31 PM To: freesurfer freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] About recon-all -i option
External Email - Use Caution
Dear All,
Hi. I have a question about the -i option for "recon-all". According to the explanation on the following page, the -i option specifies DICOM and NIfTI files, but is it OK to specify a mgz file with the -i option? https://secure-web.cisco.com/1UYHLpktzY4BG51M3Fy6Hmuwp2mf6dniSilXbYvOmS82Wjh...
I want to create a generic script file that calls NIfTI and mgz files as follows. recon-all -subject $SUBJECTS_ID -i $IMAGE_FILE -all
Thank you, ryo
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Thank you for your quick response!
On 2022/11/01 7:41, Fischl, Bruce R.,PHD wrote:
Yes, that should be fine
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Ryosuke Hayashi Sent: Monday, October 31, 2022 6:31 PM To: freesurfer freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] About recon-all -i option
External Email - Use CautionDear All,
Hi. I have a question about the -i option for "recon-all". According to the explanation on the following page, the -i option specifies DICOM and NIfTI files, but is it OK to specify a mgz file with the -i option? https://secure-web.cisco.com/1UYHLpktzY4BG51M3Fy6Hmuwp2mf6dniSilXbYvOmS82Wjh...
I want to create a generic script file that calls NIfTI and mgz files as follows. recon-all -subject $SUBJECTS_ID -i $IMAGE_FILE -all
Thank you, ryo
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/15-tKdDRqsbGUGAiVKygVMgFCgq5ZRUkLO5lXb7yTA_nXNA...
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freesurfer@nmr.mgh.harvard.edu
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Fischl, Bruce R.,PHD -
Ryosuke Hayashi