I am trying to make a group average of 5 subjects using the make_average_subject command - All subjects have cortical reconstruction done using recon-all. I attached the log file here, and the last few line reads:
----------------------- mri_concat ./tmp.mris_preproc.18803/20080724_N005/.1.mgh ./tmp.mris_preproc.18803/20080729_N002/.2.mgh ./tmp.mris_preproc.18803/20080729_N004/.3.mgh ./tmp.mris_preproc.18803/20080729_N004/.4.mgh ./tmp.mris_preproc.18803/20080807_N003/.5.mgh --o rh.orig.avg.area.mgh --mean mghRead(./tmp.mris_preproc.18803/20080724_N005/.1.mgh, -1): could not open file ninputs = 5 Checking inputs ERROR: reading ./tmp.mris_preproc.18803/20080724_N005/.1.mgh
Any ideas what may be wrong? The one thing I can think of is that recon-all was ran locally in Freesurfer 4.4.0 while I am trying to run make_average_subject in a computer-cluster that has version 4.2.0. Can this be the problem here?
Estephan
Job <make_average_surface --subjects 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ --out AO_fMRI_average> was submitted from host <bc16-n13> by user <moana> in cluster <lucky>. Job was executed on host(s) <bc01-n14>, in queue <week>, as user <moana> in cluster <lucky>. </afs/isis.unc.edu/home/m/o/moana> was used as the home directory. </largefs/moana/AO_fMRI/FreeSurfer_analysis_valid> was used as the working directory. Started at Tue Dec 22 23:12:17 2009 Results reported at Tue Dec 22 23:22:05 2009
Your job looked like:
------------------------------------------------------------ # LSBATCH: User input make_average_surface --subjects 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ --out AO_fMRI_average ------------------------------------------------------------
Exited with exit code 1.
Resource usage summary:
CPU time : 568.38 sec. Max Memory : 342 MB Max Swap : 837 MB
Max Processes : 9 Max Threads : 9
The output (if any) follows:
Your home directory for this job is /netscr/moana $Id: make_average_surface,v 1.39.2.1 2007/10/16 15:49:52 nicks Exp $ Tue Dec 22 23:12:17 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid setenv SUBJECTS_DIR /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid output ddir is /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid uid=158947(moana) gid=203(graduate) groups=203(graduate) context=root:system_r:unconfined_t:SystemLow-SystemHigh ==================== make_average_surface ==================== Tue Dec 22 23:12:17 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid /afs/isis/pkg/freesurfer-420/freesurfer64/bin/make_average_surface --subjects 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ --out AO_fMRI_average input subjects: 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ output subject: AO_fMRI_average mri_add_xform_to_header -c auto /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/mri/mni305.cor.mgz /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/mri/mni305.cor.mgz INFO: extension is mgz
#@# Making lh annotation --------------------- Tue Dec 22 23:12:19 EST 2009 mris_ca_label -ml-annot lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs 7 label/lh.aparc.annot /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average ML Label: lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs 7 label/lh.aparc.annot Reading icosahedron /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri Reading gcsa from /afs/isis/pkg/freesurfer-420/freesurfer64/average/lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs reading color table from GCSA file.... average std = 2.1 using min determinant for regularization = 0.044 0 singular and 372 ill-conditioned covariance matrices regularized Building most likely labels Filtering labels 2 filter iterations complete (2 requested, 378 changed) writing colortable into annotation file... mris_ca_label -ml-annot lh.atlas2005_simple.gcs 7 label/lh.aparc.a2005s.annot /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average ML Label: lh.atlas2005_simple.gcs 7 label/lh.aparc.a2005s.annot Reading icosahedron /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri Reading gcsa from /afs/isis/pkg/freesurfer-420/freesurfer64/average/lh.atlas2005_simple.gcs reading color table from GCSA file.... average std = 4.5 0.2 using min determinant for regularization = 0.000 0 singular and 1215 ill-conditioned covariance matrices regularized Building most likely labels Filtering labels 2 filter iterations complete (2 requested, 1804 changed) writing colortable into annotation file... #@# Making average lh.orig surface --------------------- Tue Dec 22 23:12:29 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_make_average_surface -i 7 -o orig -sdir-out /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid lh orig_avg sphere.reg AO_fMRI_average 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ reading vertex positions from orig... --------------------------------------------------- hemi = lh avg_surf_name = orig_avg canon_surf_name = sphere.reg out_sname = AO_fMRI_average xform = talairach.xfm ---------------------------------------------------
--------------------------------------------------- #@# processing subject 1/5 20080724_N005/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//mri/T1.mgz Surface area: 796.5 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 2/5 20080729_N002/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//mri/T1.mgz Surface area: 821.0 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 3/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 852.6 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 4/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 852.6 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 5/5 20080807_N003/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//mri/T1.mgz Surface area: 888.3 cm2 Applying linear transform Finished loading all data Avg surf area = 842.209 cm Reading icosahedron from /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri... setting group surface area to be 842.2 cm2 (scale=0.97) writing average orig_avg surface to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.orig_avg writing group avg surface area 842 cm2 into surface file mris_make_average_surface done
#@# Making average lh.white surface --------------------- Tue Dec 22 23:13:01 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_make_average_surface -i 7 -o white -sdir-out /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid lh white_avg sphere.reg AO_fMRI_average 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ reading vertex positions from white... --------------------------------------------------- hemi = lh avg_surf_name = white_avg canon_surf_name = sphere.reg out_sname = AO_fMRI_average xform = talairach.xfm ---------------------------------------------------
--------------------------------------------------- #@# processing subject 1/5 20080724_N005/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//mri/T1.mgz Surface area: 831.4 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 2/5 20080729_N002/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//mri/T1.mgz Surface area: 832.6 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 3/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 879.2 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 4/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 879.2 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 5/5 20080807_N003/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//mri/T1.mgz Surface area: 913.6 cm2 Applying linear transform Finished loading all data Avg surf area = 867.199 cm Reading icosahedron from /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri... setting group surface area to be 867.2 cm2 (scale=0.97) writing average white_avg surface to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.white_avg writing group avg surface area 867 cm2 into surface file mris_make_average_surface done
#@# Making average lh.pial surface --------------------- Tue Dec 22 23:13:26 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_make_average_surface -i 7 -o pial -sdir-out /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid lh pial_avg sphere.reg AO_fMRI_average 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ reading vertex positions from pial... --------------------------------------------------- hemi = lh avg_surf_name = pial_avg canon_surf_name = sphere.reg out_sname = AO_fMRI_average xform = talairach.xfm ---------------------------------------------------
--------------------------------------------------- #@# processing subject 1/5 20080724_N005/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//mri/T1.mgz Surface area: 987.8 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 2/5 20080729_N002/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//mri/T1.mgz Surface area: 968.1 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 3/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 1026.0 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 4/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 1026.0 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 5/5 20080807_N003/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//mri/T1.mgz Surface area: 1074.9 cm2 Applying linear transform Finished loading all data Avg surf area = 1016.56 cm Reading icosahedron from /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri... setting group surface area to be 1016.6 cm2 (scale=0.98) writing average pial_avg surface to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.pial_avg writing group avg surface area 1017 cm2 into surface file mris_make_average_surface done
#@# Making average lh.inflated surface --------------------- Tue Dec 22 23:13:52 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_make_average_surface -i 7 -o inflated -sdir-out /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid lh inflated_avg sphere.reg AO_fMRI_average 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ reading vertex positions from inflated... --------------------------------------------------- hemi = lh avg_surf_name = inflated_avg canon_surf_name = sphere.reg out_sname = AO_fMRI_average xform = talairach.xfm ---------------------------------------------------
--------------------------------------------------- #@# processing subject 1/5 20080724_N005/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//mri/T1.mgz Surface area: 758.4 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 2/5 20080729_N002/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//mri/T1.mgz Surface area: 754.7 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 3/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 799.8 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 4/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 799.8 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 5/5 20080807_N003/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//surf/lh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//mri/T1.mgz Surface area: 829.9 cm2 Applying linear transform Finished loading all data Avg surf area = 788.544 cm Reading icosahedron from /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri... setting group surface area to be 788.5 cm2 (scale=0.85) writing average inflated_avg surface to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.inflated_avg writing group avg surface area 789 cm2 into surface file mris_make_average_surface done
---------------------------------------------------
#@# Making average lh.sulc ---------------------- Tue Dec 22 23:14:18 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_average_curvature -o AO_fMRI_average sulc lh sphere.reg 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.avg_sulc painting output onto subject AO_fMRI_average. processing subject 20080724_N005/... processing subject 20080729_N002/... processing subject 20080729_N004/... processing subject 20080729_N004/... processing subject 20080807_N003/... reading output surface /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.sphere.reg...
#@# Making average lh.curv ---------------------- Tue Dec 22 23:14:30 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_average_curvature -o AO_fMRI_average curv lh sphere.reg 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.avg_curv painting output onto subject AO_fMRI_average. processing subject 20080724_N005/... processing subject 20080729_N002/... processing subject 20080729_N004/... processing subject 20080729_N004/... processing subject 20080807_N003/... reading output surface /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.sphere.reg...
#@# Making average lh.thickness ---------------------- Tue Dec 22 23:14:43 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_average_curvature -o AO_fMRI_average thickness lh sphere.reg 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.avg_thickness painting output onto subject AO_fMRI_average. processing subject 20080724_N005/... processing subject 20080729_N002/... processing subject 20080729_N004/... processing subject 20080729_N004/... processing subject 20080807_N003/... reading output surface /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.sphere.reg...
---------------------------------------------------
#@# Smoothing, inflating, etc lh ----------------
/largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf mris_smooth smoothing for 5 iterations reading group avg surface area 867 cm2 from file smoothing surface tessellation for 5 iterations... smoothing complete - recomputing first and second fundamental forms... writing smoothed curvature to ./lh.curv writing smoothed area to ./lh.area writing group avg surface area 867 cm2 into surface file
mris_inflate reading group avg surface area 867 cm2 from file avg radius = 50.9 mm, total surface area = 84883 mm2 writing inflated surface to ./lh.inflated writing sulcal depths to ./lh.sulc step 000: RMS=0.066 (target=0.015) step 005: RMS=0.049 (target=0.015) step 010: RMS=0.039 (target=0.015) step 015: RMS=0.032 (target=0.015) step 020: RMS=0.026 (target=0.015) step 025: RMS=0.022 (target=0.015) step 030: RMS=0.019 (target=0.015) step 035: RMS=0.016 (target=0.015) inflation complete. writing group avg surface area 867 cm2 into surface file inflation took 1.4 minutes
mris_curvature averaging curvature patterns 10 times. reading group avg surface area 867 cm2 from file total integrated curvature = -71.149*4pi (-894.090) --> 72 handles ICI = 343.3, FI = 5231.0, variation=78141.753 writing Gaussian curvature to ./lh.white_avg.K...done. writing mean curvature to ./lh.white_avg.H...done.
mri_annotation2label --subject AO_fMRI_average --hemi lh --outdir /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078 --annotation aparc.a2005s reading group avg surface area 867 cm2 from file reading colortable from annotation file... colortable with 82 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild/Simple_surface_labels2005.txt) subject = AO_fMRI_average annotation = aparc.a2005s hemi = lh outdir = (null) surface = white
Reading surface /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/lh.white Loading annotations from /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/label/lh.aparc.a2005s.annot max index = 81 3 395 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_cingulate-Isthmus.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_cingulate-Isthmus.label 4 2861 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_cingulate-Main_part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_cingulate-Main_part.label 5 1479 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_cuneus.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_cuneus.label 6 1838 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontal_inf-Opercular_part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontal_inf-Opercular_part.label 7 462 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontal_inf-Orbital_part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontal_inf-Orbital_part.label 8 1048 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontal_inf-Triangular_part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontal_inf-Triangular_part.label 9 3827 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontal_middle.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontal_middle.label 10 8507 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontal_superior.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontal_superior.label 11 342 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontomarginal.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_frontomarginal.label 12 569 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_insular_long.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_insular_long.label 13 949 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_insular_short.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_insular_short.label 14 1373 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_and_S_occipital_inferior.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_and_S_occipital_inferior.label 15 2060 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_occipital_middle.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.G_occipital_middle.label 16 1316 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/largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_precentral-Inferior-part.label 73 1902 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_precentral-Superior-part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_precentral-Superior-part.label 74 71 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_subcentral_ant.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_subcentral_ant.label 75 263 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_subcentral_post.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_subcentral_post.label 76 493 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_suborbital.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_suborbital.label 77 1446 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_subparietal.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_subparietal.label 79 1304 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_temporal_inferior.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_temporal_inferior.label 80 6746 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_temporal_superior.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_temporal_superior.label 81 474 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_temporal_transverse.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/lh.S_temporal_transverse.label mri_mergelabels -o /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/label/lh.cortex.label -d /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078 Done
#@# Making rh annotation --------------------- Tue Dec 22 23:16:46 EST 2009 mris_ca_label -ml-annot rh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs 7 label/rh.aparc.annot /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average ML Label: rh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs 7 label/rh.aparc.annot Reading icosahedron /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri Reading gcsa from /afs/isis/pkg/freesurfer-420/freesurfer64/average/rh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.007 0 singular and 318 ill-conditioned covariance matrices regularized Building most likely labels Filtering labels 2 filter iterations complete (2 requested, 328 changed) writing colortable into annotation file... mris_ca_label -ml-annot rh.atlas2005_simple.gcs 7 label/rh.aparc.a2005s.annot /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average ML Label: rh.atlas2005_simple.gcs 7 label/rh.aparc.a2005s.annot Reading icosahedron /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri Reading gcsa from /afs/isis/pkg/freesurfer-420/freesurfer64/average/rh.atlas2005_simple.gcs reading color table from GCSA file.... average std = 1.0 0.2 using min determinant for regularization = 0.000 0 singular and 827 ill-conditioned covariance matrices regularized Building most likely labels Filtering labels 2 filter iterations complete (2 requested, 1935 changed) writing colortable into annotation file... #@# Making average rh.orig surface --------------------- Tue Dec 22 23:16:56 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_make_average_surface -i 7 -o orig -sdir-out /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid rh orig_avg sphere.reg AO_fMRI_average 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ reading vertex positions from orig... --------------------------------------------------- hemi = rh avg_surf_name = orig_avg canon_surf_name = sphere.reg out_sname = AO_fMRI_average xform = talairach.xfm ---------------------------------------------------
--------------------------------------------------- #@# processing subject 1/5 20080724_N005/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//mri/T1.mgz Surface area: 791.1 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 2/5 20080729_N002/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//mri/T1.mgz Surface area: 810.2 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 3/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 835.8 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 4/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 835.8 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 5/5 20080807_N003/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//mri/T1.mgz Surface area: 872.7 cm2 Applying linear transform Finished loading all data Avg surf area = 829.09 cm Reading icosahedron from /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri... setting group surface area to be 829.1 cm2 (scale=0.97) writing average orig_avg surface to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.orig_avg writing group avg surface area 829 cm2 into surface file mris_make_average_surface done
#@# Making average rh.white surface --------------------- Tue Dec 22 23:17:22 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_make_average_surface -i 7 -o white -sdir-out /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid rh white_avg sphere.reg AO_fMRI_average 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ reading vertex positions from white... --------------------------------------------------- hemi = rh avg_surf_name = white_avg canon_surf_name = sphere.reg out_sname = AO_fMRI_average xform = talairach.xfm ---------------------------------------------------
--------------------------------------------------- #@# processing subject 1/5 20080724_N005/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//mri/T1.mgz Surface area: 824.5 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 2/5 20080729_N002/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//mri/T1.mgz Surface area: 832.0 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 3/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 863.3 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 4/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 863.3 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 5/5 20080807_N003/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//mri/T1.mgz Surface area: 895.5 cm2 Applying linear transform Finished loading all data Avg surf area = 855.726 cm Reading icosahedron from /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri... setting group surface area to be 855.7 cm2 (scale=0.97) writing average white_avg surface to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.white_avg writing group avg surface area 856 cm2 into surface file mris_make_average_surface done
#@# Making average rh.pial surface --------------------- Tue Dec 22 23:17:46 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_make_average_surface -i 7 -o pial -sdir-out /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid rh pial_avg sphere.reg AO_fMRI_average 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ reading vertex positions from pial... --------------------------------------------------- hemi = rh avg_surf_name = pial_avg canon_surf_name = sphere.reg out_sname = AO_fMRI_average xform = talairach.xfm ---------------------------------------------------
--------------------------------------------------- #@# processing subject 1/5 20080724_N005/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//mri/T1.mgz Surface area: 988.4 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 2/5 20080729_N002/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//mri/T1.mgz Surface area: 966.5 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 3/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 1008.5 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 4/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 1008.5 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 5/5 20080807_N003/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//mri/T1.mgz Surface area: 1048.4 cm2 Applying linear transform Finished loading all data Avg surf area = 1004.08 cm Reading icosahedron from /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri... setting group surface area to be 1004.1 cm2 (scale=0.98) writing average pial_avg surface to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.pial_avg writing group avg surface area 1004 cm2 into surface file mris_make_average_surface done
#@# Making average rh.inflated surface --------------------- Tue Dec 22 23:18:11 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_make_average_surface -i 7 -o inflated -sdir-out /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid rh inflated_avg sphere.reg AO_fMRI_average 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ reading vertex positions from inflated... --------------------------------------------------- hemi = rh avg_surf_name = inflated_avg canon_surf_name = sphere.reg out_sname = AO_fMRI_average xform = talairach.xfm ---------------------------------------------------
--------------------------------------------------- #@# processing subject 1/5 20080724_N005/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//mri/T1.mgz Surface area: 750.5 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 2/5 20080729_N002/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//mri/T1.mgz Surface area: 752.9 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 3/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 783.9 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 4/5 20080729_N004/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//mri/T1.mgz Surface area: 783.9 cm2 Applying linear transform
--------------------------------------------------- #@# processing subject 5/5 20080807_N003/... Reading /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//surf/rh.sphere.reg Read /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//mri/T1.mgz Surface area: 814.9 cm2 Applying linear transform Finished loading all data Avg surf area = 777.186 cm Reading icosahedron from /afs/isis/pkg/freesurfer-420/freesurfer64/lib/bem/ic7.tri... setting group surface area to be 777.2 cm2 (scale=0.85) writing average inflated_avg surface to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.inflated_avg writing group avg surface area 777 cm2 into surface file mris_make_average_surface done
---------------------------------------------------
#@# Making average rh.sulc ---------------------- Tue Dec 22 23:18:36 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_average_curvature -o AO_fMRI_average sulc rh sphere.reg 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.avg_sulc painting output onto subject AO_fMRI_average. processing subject 20080724_N005/... processing subject 20080729_N002/... processing subject 20080729_N004/... processing subject 20080729_N004/... processing subject 20080807_N003/... reading output surface /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.sphere.reg...
#@# Making average rh.curv ---------------------- Tue Dec 22 23:18:49 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_average_curvature -o AO_fMRI_average curv rh sphere.reg 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.avg_curv painting output onto subject AO_fMRI_average. processing subject 20080724_N005/... processing subject 20080729_N002/... processing subject 20080729_N004/... processing subject 20080729_N004/... processing subject 20080807_N003/... reading output surface /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.sphere.reg...
#@# Making average rh.thickness ---------------------- Tue Dec 22 23:19:01 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average mris_average_curvature -o AO_fMRI_average thickness rh sphere.reg 20080724_N005/ 20080729_N002/ 20080729_N004/ 20080729_N004/ 20080807_N003/ /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.avg_thickness painting output onto subject AO_fMRI_average. processing subject 20080724_N005/... processing subject 20080729_N002/... processing subject 20080729_N004/... processing subject 20080729_N004/... processing subject 20080807_N003/... reading output surface /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.sphere.reg...
---------------------------------------------------
#@# Smoothing, inflating, etc rh ----------------
/largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf mris_smooth smoothing for 5 iterations reading group avg surface area 856 cm2 from file smoothing surface tessellation for 5 iterations... smoothing complete - recomputing first and second fundamental forms... writing smoothed curvature to ./rh.curv writing smoothed area to ./rh.area writing group avg surface area 856 cm2 into surface file
mris_inflate reading group avg surface area 856 cm2 from file avg radius = 50.4 mm, total surface area = 83219 mm2 writing inflated surface to ./rh.inflated writing sulcal depths to ./rh.sulc step 000: RMS=0.066 (target=0.015) step 005: RMS=0.049 (target=0.015) step 010: RMS=0.039 (target=0.015) step 015: RMS=0.032 (target=0.015) step 020: RMS=0.027 (target=0.015) step 025: RMS=0.023 (target=0.015) step 030: RMS=0.019 (target=0.015) step 035: RMS=0.017 (target=0.015) inflation complete. writing group avg surface area 856 cm2 into surface file inflation took 1.4 minutes
mris_curvature averaging curvature patterns 10 times. reading group avg surface area 856 cm2 from file total integrated curvature = -60.616*4pi (-761.720) --> 62 handles ICI = 466.4, FI = 11983.4, variation=166517.028 writing Gaussian curvature to ./rh.white_avg.K...done. writing mean curvature to ./rh.white_avg.H...done.
mri_annotation2label --subject AO_fMRI_average --hemi rh --outdir /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078 --annotation aparc.a2005s reading group avg surface area 856 cm2 from file reading colortable from annotation file... colortable with 82 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild/Simple_surface_labels2005.txt) subject = AO_fMRI_average annotation = aparc.a2005s hemi = rh outdir = (null) surface = white
Reading surface /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.white Loading annotations from /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/label/rh.aparc.a2005s.annot max index = 81 3 387 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_cingulate-Isthmus.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_cingulate-Isthmus.label 4 2350 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_cingulate-Main_part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_cingulate-Main_part.label 5 1412 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_cuneus.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_cuneus.label 6 1479 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontal_inf-Opercular_part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontal_inf-Opercular_part.label 7 380 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontal_inf-Orbital_part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontal_inf-Orbital_part.label 8 1117 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontal_inf-Triangular_part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontal_inf-Triangular_part.label 9 4099 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontal_middle.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontal_middle.label 10 7949 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontal_superior.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontal_superior.label 11 383 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontomarginal.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_frontomarginal.label 12 701 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_insular_long.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_insular_long.label 13 865 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_insular_short.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_insular_short.label 14 1010 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_and_S_occipital_inferior.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_and_S_occipital_inferior.label 15 2104 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_occipital_middle.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_occipital_middle.label 16 1533 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_occipital_superior.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_occipital_superior.label 17 1860 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_occipit-temp_lat-Or_fusiform.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_occipit-temp_lat-Or_fusiform.label 18 2239 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_occipit-temp_med-Lingual_part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.G_occipit-temp_med-Lingual_part.label 19 2050 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/largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_intraparietal-and_Parietal_transverse.label 60 723 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_occipital_anterior.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_occipital_anterior.label 61 937 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_occipital_middle_and_Lunatus.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_occipital_middle_and_Lunatus.label 62 1520 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_occipital_superior_and_transversalis.label LabelWrite: saving to 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/largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_orbital-H_shapped.label 66 375 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_orbital_lateral.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_orbital_lateral.label 67 938 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_orbital_medial-Or_olfactory.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_orbital_medial-Or_olfactory.label 68 209 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_paracentral.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_paracentral.label 69 2113 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_parieto_occipital.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_parieto_occipital.label 70 2280 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_pericallosal.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_pericallosal.label 71 3874 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_postcentral.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_postcentral.label 72 1922 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_precentral-Inferior-part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_precentral-Inferior-part.label 73 1921 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_precentral-Superior-part.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_precentral-Superior-part.label 74 205 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_subcentral_ant.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_subcentral_ant.label 75 283 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_subcentral_post.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_subcentral_post.label 76 220 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_suborbital.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_suborbital.label 77 1999 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_subparietal.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_subparietal.label 79 1276 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_temporal_inferior.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_temporal_inferior.label 80 7673 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_temporal_superior.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_temporal_superior.label 81 365 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_temporal_transverse.label LabelWrite: saving to /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078/rh.S_temporal_transverse.label mri_mergelabels -o /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/label/rh.cortex.label -d /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/make_cortex_label.tmp.17078 Done /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf mris_preproc --out rh.orig.avg.area.mgh --f /tmp/subjlist.17078 --target AO_fMRI_average --hemi rh --area orig --mean nsubjects = 5 tmpdir is ./tmp.mris_preproc.18803 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf Tue Dec 22 23:20:59 EST 2009 /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf --out rh.orig.avg.area.mgh --f /tmp/subjlist.17078 --target AO_fMRI_average --hemi rh --area orig --mean Linux bc01-n14.isis.unc.edu 2.6.18-128.7.1.el5 #1 SMP Wed Aug 19 04:00:49 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux setenv SUBJECTS_DIR /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid tmpdir is ./tmp.mris_preproc.18803
--------------------------------------------------- #@# 1/5 20080724_N005/ Tue Dec 22 23:20:59 EST 2009 -------------- ----------------------- mri_surf2surf --hemi rh --srcsubject 20080724_N005/ --surfreg sphere.reg --sval-area orig --jac --trgsubject AO_fMRI_average --tval ./tmp.mris_preproc.18803/20080724_N005/.1.mgh --noreshape mghWrite(./tmp.mris_preproc.18803/20080724_N005/.1.mgh, -1): could not open file Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg srcsubject = 20080724_N005/ srcval = (null) srctype = trgsubject = AO_fMRI_average trgval = ./tmp.mris_preproc.18803/20080724_N005/.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) Reading source surface reg /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//surf/rh.sphere.reg Loading source data Reading surface file /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080724_N005//surf/rh.orig INFO: surfcluster: NOT fixing group surface area Reading target surface reg /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.sphere.reg Done Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr: building source hash (res=16). Surf2Surf: 1st Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (124929) Reverse Loop had 20093 hits INFO: nSrcLost = 0 nTrg121 = 149389, nTrgMulti = 14453, MnTrgMultiHits = 2.39023 nSrc121 = 81283, nSrcLost = 0, nSrcMulti = 43646, MnSrcMultiHits = 2.35192 Saving target data
--------------------------------------------------- #@# 2/5 20080729_N002/ Tue Dec 22 23:21:12 EST 2009 -------------- ----------------------- mri_surf2surf --hemi rh --srcsubject 20080729_N002/ --surfreg sphere.reg --sval-area orig --jac --trgsubject AO_fMRI_average --tval ./tmp.mris_preproc.18803/20080729_N002/.2.mgh --noreshape mghWrite(./tmp.mris_preproc.18803/20080729_N002/.2.mgh, -1): could not open file Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg srcsubject = 20080729_N002/ srcval = (null) srctype = trgsubject = AO_fMRI_average trgval = ./tmp.mris_preproc.18803/20080729_N002/.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) Reading source surface reg /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//surf/rh.sphere.reg Loading source data Reading surface file /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N002//surf/rh.orig INFO: surfcluster: NOT fixing group surface area Reading target surface reg /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.sphere.reg Done Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr: building source hash (res=16). Surf2Surf: 1st Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (129533) Reverse Loop had 23171 hits INFO: nSrcLost = 0 nTrg121 = 147484, nTrgMulti = 16358, MnTrgMultiHits = 2.41649 nSrc121 = 86810, nSrcLost = 0, nSrcMulti = 42723, MnSrcMultiHits = 2.34541 Saving target data
--------------------------------------------------- #@# 3/5 20080729_N004/ Tue Dec 22 23:21:25 EST 2009 -------------- ----------------------- mri_surf2surf --hemi rh --srcsubject 20080729_N004/ --surfreg sphere.reg --sval-area orig --jac --trgsubject AO_fMRI_average --tval ./tmp.mris_preproc.18803/20080729_N004/.3.mgh --noreshape mghWrite(./tmp.mris_preproc.18803/20080729_N004/.3.mgh, -1): could not open file Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg srcsubject = 20080729_N004/ srcval = (null) srctype = trgsubject = AO_fMRI_average trgval = ./tmp.mris_preproc.18803/20080729_N004/.3.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) Reading source surface reg /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.sphere.reg Loading source data Reading surface file /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.orig INFO: surfcluster: NOT fixing group surface area Reading target surface reg /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.sphere.reg Done Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr: building source hash (res=16). Surf2Surf: 1st Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (133032) Reverse Loop had 24882 hits INFO: nSrcLost = 0 nTrg121 = 145322, nTrgMulti = 18520, MnTrgMultiHits = 2.34352 nSrc121 = 91533, nSrcLost = 0, nSrcMulti = 41499, MnSrcMultiHits = 2.34201 Saving target data
--------------------------------------------------- #@# 4/5 20080729_N004/ Tue Dec 22 23:21:38 EST 2009 -------------- ----------------------- mri_surf2surf --hemi rh --srcsubject 20080729_N004/ --surfreg sphere.reg --sval-area orig --jac --trgsubject AO_fMRI_average --tval ./tmp.mris_preproc.18803/20080729_N004/.4.mgh --noreshape mghWrite(./tmp.mris_preproc.18803/20080729_N004/.4.mgh, -1): could not open file Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg srcsubject = 20080729_N004/ srcval = (null) srctype = trgsubject = AO_fMRI_average trgval = ./tmp.mris_preproc.18803/20080729_N004/.4.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) Reading source surface reg /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.sphere.reg Loading source data Reading surface file /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080729_N004//surf/rh.orig INFO: surfcluster: NOT fixing group surface area Reading target surface reg /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.sphere.reg Done Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr: building source hash (res=16). Surf2Surf: 1st Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (133032) Reverse Loop had 24882 hits INFO: nSrcLost = 0 nTrg121 = 145322, nTrgMulti = 18520, MnTrgMultiHits = 2.34352 nSrc121 = 91533, nSrcLost = 0, nSrcMulti = 41499, MnSrcMultiHits = 2.34201 Saving target data
--------------------------------------------------- #@# 5/5 20080807_N003/ Tue Dec 22 23:21:51 EST 2009 -------------- ----------------------- mri_surf2surf --hemi rh --srcsubject 20080807_N003/ --surfreg sphere.reg --sval-area orig --jac --trgsubject AO_fMRI_average --tval ./tmp.mris_preproc.18803/20080807_N003/.5.mgh --noreshape mghWrite(./tmp.mris_preproc.18803/20080807_N003/.5.mgh, -1): could not open file Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg srcsubject = 20080807_N003/ srcval = (null) srctype = trgsubject = AO_fMRI_average trgval = ./tmp.mris_preproc.18803/20080807_N003/.5.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) Reading source surface reg /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//surf/rh.sphere.reg Loading source data Reading surface file /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/20080807_N003//surf/rh.orig INFO: surfcluster: NOT fixing group surface area Reading target surface reg /largefs/moana/AO_fMRI/FreeSurfer_analysis_valid/AO_fMRI_average/surf/rh.sphere.reg Done Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr: building source hash (res=16). Surf2Surf: 1st Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (138842) Reverse Loop had 27271 hits INFO: nSrcLost = 0 nTrg121 = 144105, nTrgMulti = 19737, MnTrgMultiHits = 2.38172 nSrc121 = 98700, nSrcLost = 0, nSrcMulti = 40142, MnSrcMultiHits = 2.30215 Saving target data
----------------------- mri_concat ./tmp.mris_preproc.18803/20080724_N005/.1.mgh ./tmp.mris_preproc.18803/20080729_N002/.2.mgh ./tmp.mris_preproc.18803/20080729_N004/.3.mgh ./tmp.mris_preproc.18803/20080729_N004/.4.mgh ./tmp.mris_preproc.18803/20080807_N003/.5.mgh --o rh.orig.avg.area.mgh --mean mghRead(./tmp.mris_preproc.18803/20080724_N005/.1.mgh, -1): could not open file ninputs = 5 Checking inputs ERROR: reading ./tmp.mris_preproc.18803/20080724_N005/.1.mgh
freesurfer@nmr.mgh.harvard.edu
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Estephan Moana