Yes, that is what the cortex flag is for. mris_preproc should automatically use the cortex flag

On 08/25/2018 05:06 PM, Alon Baram wrote:

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Hello,

When smoothing with mri_surf2surf, it's possible to use the --cortex flag to constrain the smoothing only to cortex (exclude the medial wall and zero it out).

Is there a way to tell mris_preproc to do the same (i.e to pass the --cortex flag when it calls mri_surf2surf?

thanks!

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