Hello,
I am using mri_convert to convert my standard T1-weighted structural images into nifti format.
The conversion works, but it might be somewhat delayed due to spamming the console with the following message
ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: sd_withholder/withholder_MRI/scans/1201_T1W_TFE/DICOM/1.3.46.670589.11.42034.5.0.10936.2017012009011821006-1201-95-sktipi.dcm break DICOMRead.c:5228
As far as I can tell, it spams this message once for each dicom file in the directory, and there being hundreds or even thousands of dicom files for a single subject, this can get old pretty quick. I think this might be new behavior in freesurfer 6, because I don't recall seeing this with 5.3 (although I could be wrong)
Is there anyway to disable this?
Thanks, - Eli
Houston Methodist. Leading Medicine. Houston Methodist is ranked by U.S. News & World Report as the No. 1 hospital in Texas for patient care. Houston Methodist is nationally ranked in 8 specialties and is designated as a Magnet hospital for excellence in nursing. Visit us at houstonmethodist.org. Follow us at twitter.com/MethodistHosp and facebook.com/HoustonMethodist. ***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist and/or its relevant affiliates and may contain restricted and privileged material for the sole use of the intended recipient(s). Any review, use, distribution or disclosure by others is strictly prohibited. If you are not the intended recipient (or authorized to receive for the recipient), please contact the sender and delete all copies of the message. Thank you.
try
export FS_LOAD_DWI=0
(or setenv FS_LOAD_DWI 0 for cshell)
On 01/24/2018 02:44 PM, Rockers, Elijah D. wrote:
Hello,
I am using mri_convert to convert my standard T1-weighted structural images into nifti format.
The conversion works, but it might be somewhat delayed due to spamming the console with the following message
ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: sd_withholder/withholder_MRI/scans/1201_T1W_TFE/DICOM/1.3.46.670589.11.42034.5.0.10936.2017012009011821006-1201-95-sktipi.dcm break DICOMRead.c:5228
As far as I can tell, it spams this message once for each dicom file in the directory, and there being hundreds or even thousands of dicom files for a single subject, this can get old pretty quick. I think this might be new behavior in freesurfer 6, because I don't recall seeing this with 5.3 (although I could be wrong)
Is there anyway to disable this?
Thanks,
- Eli
Houston Methodist. Leading Medicine.
Houston Methodist is ranked by /U.S. News & World Report/ as the No. 1 hospital in Texas for patient care. Houston Methodist is nationally ranked in 8 specialties and is designated as a Magnet hospital for excellence in nursing. Visit us at houstonmethodist.org <houstonmethodist.org>. Follow us at twitter.com/MethodistHosp <twitter.com/MethodistHosp> and facebook.com/HoustonMethodist.
***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist and/or its relevant affiliates and may contain restricted and privileged material for the sole use of the intended recipient(s). Any review, use, distribution or disclosure by others is strictly prohibited. If you are not the intended recipient (or authorized to receive for the recipient), please contact the sender and delete all copies of the message. Thank you.
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Rockers, Elijah D.