is this only on Tiger? And does it happen with all your subjects now that you have upgraded? On Tue, 31 May 2005, Jia Liu wrote:
Hi, Bruce-
Thanks for your reply. I re-did morph for the right hemisphere, and the problem persists.
CHECKING SUBJECT ttt WARN: time for rh.orig is older than rh.qsphere WARN: file rh.sphere.reg is not equal in size to rh.smoothwm
-rw-rw-r-- 1 jliu jliu 4853285 May 31 12:45 rh.sphere.reg -rwxrwxr-x 1 jliu jliu 4853068 May 31 09:43 rh.smoothwm -rwxrwxr-x 1 jliu jliu 4853068 May 31 09:43 rh.orig
The log file is attached. What should I do to correct this problem? Thanks again for your help!
Best,
jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, May 29, 2005 9:42 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
you will need to rerun the morph. On Sun, 29 May 2005, Jia Liu wrote:
Hi, Bruce-
No, the ?h.sphere.reg files are slightly larger than the orig files.
Below
is the list of files in the surf directory.
-rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.inflated -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.orig -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.pial -rw-rw-r-- 1 app app 4858721 Mar 16 23:46 lh.rh.sphere.reg -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.smoothwm -rw-rw-r-- 1 app app 4858504 Mar 16 20:35 lh.sphere -rw-rw-r-- 1 app app 4858721 Mar 16 22:14 lh.sphere.reg -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.white -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.inflated -rw-rw-r-- 1 app app 4853285 Mar 16 18:54 rh.lh.sphere.reg -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.orig -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.pial -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.smoothwm -rw-rw-r-- 1 app app 4853068 Mar 16 15:17 rh.sphere -rw-rw-r-- 1 app app 4853285 Mar 16 16:59 rh.sphere.reg -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.white
Will this affect the surface-based group analysis?
Thanks again for your help!
Best,
jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Friday, May 27, 2005 8:10 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] questions on check_subject
not sure why the smoothwm would be different size. Is it the same size
as
the orig? How about the rest of the surfaces for each hemis (sphere,
white,
pial)
On Fri, 27 May 2005, Jia Liu wrote:
Hi,
I used check_subject and found following error message on all my
subjects:
Zion:/nfs/home/Subjects> check_subject subKL CHECKING SUBJECT subKL WARN: file rh.sphere.reg is not equal in size to rh.smoothwm WARN: file lh.sphere.reg is not equal in size to lh.smoothwm WARN: file lh.rh.sphere.reg is not equal in size to lh.smoothwm Exit 3
However, I looked through recon-all log files and found no error
messages.
So what does the error message above mean? How to correct this
problem?
Is
there any document on check_subject? Thanks a lot for your help!
Best,
Jia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
No, I am using Linux (Fedora 1) but not Mac OS X, and yes, the problem exists in all my subjects (I happened to notice it when I ran check_subject). Best, jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tuesday, May 31, 2005 7:43 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
is this only on Tiger? And does it happen with all your subjects now that you have upgraded? On Tue, 31 May 2005, Jia Liu wrote:
Hi, Bruce-
Thanks for your reply. I re-did morph for the right hemisphere, and the problem persists.
CHECKING SUBJECT ttt WARN: time for rh.orig is older than rh.qsphere WARN: file rh.sphere.reg is not equal in size to rh.smoothwm
-rw-rw-r-- 1 jliu jliu 4853285 May 31 12:45 rh.sphere.reg -rwxrwxr-x 1 jliu jliu 4853068 May 31 09:43 rh.smoothwm -rwxrwxr-x 1 jliu jliu 4853068 May 31 09:43 rh.orig
The log file is attached. What should I do to correct this problem?
Thanks
again for your help!
Best,
jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, May 29, 2005 9:42 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
you will need to rerun the morph. On Sun, 29 May 2005, Jia Liu wrote:
Hi, Bruce-
No, the ?h.sphere.reg files are slightly larger than the orig files.
Below
is the list of files in the surf directory.
-rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.inflated -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.orig -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.pial -rw-rw-r-- 1 app app 4858721 Mar 16 23:46
lh.rh.sphere.reg
-rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.smoothwm -rw-rw-r-- 1 app app 4858504 Mar 16 20:35 lh.sphere -rw-rw-r-- 1 app app 4858721 Mar 16 22:14 lh.sphere.reg -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.white -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.inflated -rw-rw-r-- 1 app app 4853285 Mar 16 18:54
rh.lh.sphere.reg
-rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.orig -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.pial -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.smoothwm -rw-rw-r-- 1 app app 4853068 Mar 16 15:17 rh.sphere -rw-rw-r-- 1 app app 4853285 Mar 16 16:59 rh.sphere.reg -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.white
Will this affect the surface-based group analysis?
Thanks again for your help!
Best,
jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Friday, May 27, 2005 8:10 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] questions on check_subject
not sure why the smoothwm would be different size. Is it the same
size
as
the orig? How about the rest of the surfaces for each hemis (sphere,
white,
pial)
On Fri, 27 May 2005, Jia Liu wrote:
Hi,
I used check_subject and found following error message on all my
subjects:
Zion:/nfs/home/Subjects> check_subject subKL CHECKING SUBJECT subKL WARN: file rh.sphere.reg is not equal in size to rh.smoothwm WARN: file lh.sphere.reg is not equal in size to lh.smoothwm WARN: file lh.rh.sphere.reg is not equal in size to lh.smoothwm Exit 3
However, I looked through recon-all log files and found no error
messages.
So what does the error message above mean? How to correct this
problem?
Is
there any document on check_subject? Thanks a lot for your help!
Best,
Jia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
can you run mris_euler_number on them and send me the results? It may be that you have a somewhat newer version of mris_register that embeds geometry info into the surface file.
On Tue, 31 May 2005, Jia Liu wrote:
No, I am using Linux (Fedora 1) but not Mac OS X, and yes, the problem exists in all my subjects (I happened to notice it when I ran check_subject). Best, jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tuesday, May 31, 2005 7:43 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
is this only on Tiger? And does it happen with all your subjects now that you have upgraded? On Tue, 31 May 2005, Jia Liu wrote:
Hi, Bruce-
Thanks for your reply. I re-did morph for the right hemisphere, and the problem persists.
CHECKING SUBJECT ttt WARN: time for rh.orig is older than rh.qsphere WARN: file rh.sphere.reg is not equal in size to rh.smoothwm
-rw-rw-r-- 1 jliu jliu 4853285 May 31 12:45 rh.sphere.reg -rwxrwxr-x 1 jliu jliu 4853068 May 31 09:43 rh.smoothwm -rwxrwxr-x 1 jliu jliu 4853068 May 31 09:43 rh.orig
The log file is attached. What should I do to correct this problem?
Thanks
again for your help!
Best,
jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, May 29, 2005 9:42 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
you will need to rerun the morph. On Sun, 29 May 2005, Jia Liu wrote:
Hi, Bruce-
No, the ?h.sphere.reg files are slightly larger than the orig files.
Below
is the list of files in the surf directory.
-rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.inflated -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.orig -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.pial -rw-rw-r-- 1 app app 4858721 Mar 16 23:46
lh.rh.sphere.reg
-rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.smoothwm -rw-rw-r-- 1 app app 4858504 Mar 16 20:35 lh.sphere -rw-rw-r-- 1 app app 4858721 Mar 16 22:14 lh.sphere.reg -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.white -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.inflated -rw-rw-r-- 1 app app 4853285 Mar 16 18:54
rh.lh.sphere.reg
-rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.orig -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.pial -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.smoothwm -rw-rw-r-- 1 app app 4853068 Mar 16 15:17 rh.sphere -rw-rw-r-- 1 app app 4853285 Mar 16 16:59 rh.sphere.reg -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.white
Will this affect the surface-based group analysis?
Thanks again for your help!
Best,
jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Friday, May 27, 2005 8:10 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] questions on check_subject
not sure why the smoothwm would be different size. Is it the same
size
as
the orig? How about the rest of the surfaces for each hemis (sphere,
white,
pial)
On Fri, 27 May 2005, Jia Liu wrote:
> Hi, > > I used check_subject and found following error message on all my
subjects:
> > Zion:/nfs/home/Subjects> check_subject subKL > CHECKING SUBJECT subKL > WARN: file rh.sphere.reg is not equal in size to rh.smoothwm > WARN: file lh.sphere.reg is not equal in size to lh.smoothwm > WARN: file lh.rh.sphere.reg is not equal in size to lh.smoothwm > Exit 3 > > However, I looked through recon-all log files and found no error
messages.
> So what does the error message above mean? How to correct this
problem?
Is
> there any document on check_subject? Thanks a lot for your help! > > Best, > > Jia > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Below is the output from mris_euler_number:
zion:/nfs/home/Subjects/ttt/surf> mris_euler_number rh.sphere.reg euler # = v-e+f = 2g-2: 134807 - 404415 + 269610 = 2 --> 0 holes F =2V-4: 269610 = 269614-4 (0) 2E=3F: 808830 = 808830 (0) total defect index = 0
zion:/nfs/home/Subjects/ttt/surf> mris_euler_number rh.smoothwm euler # = v-e+f = 2g-2: 134807 - 404415 + 269610 = 2 --> 0 holes F =2V-4: 269610 = 269614-4 (0) 2E=3F: 808830 = 808830 (0)
total defect index = 0
zion:/nfs/home/Subjects/ttt/surf> mris_euler_number rh.orig euler # = v-e+f = 2g-2: 134807 - 404415 + 269610 = 2 --> 0 holes F =2V-4: 269610 = 269614-4 (0) 2E=3F: 808830 = 808830 (0) total defect index = 0
Besides, there is no version # for mris_register (mris_register --version), but we are using the newest release (February 18th 2004). Thanks again for your help on this issue.
Jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tuesday, May 31, 2005 8:16 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
can you run mris_euler_number on them and send me the results? It may be that you have a somewhat newer version of mris_register that embeds geometry info into the surface file.
On Tue, 31 May 2005, Jia Liu wrote:
No, I am using Linux (Fedora 1) but not Mac OS X, and yes, the problem exists in all my subjects (I happened to notice it when I ran check_subject). Best, jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tuesday, May 31, 2005 7:43 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
is this only on Tiger? And does it happen with all your subjects now
that
you have upgraded? On Tue, 31 May 2005, Jia Liu wrote:
Hi, Bruce-
Thanks for your reply. I re-did morph for the right hemisphere, and
the
problem persists.
CHECKING SUBJECT ttt WARN: time for rh.orig is older than rh.qsphere WARN: file rh.sphere.reg is not equal in size to rh.smoothwm
-rw-rw-r-- 1 jliu jliu 4853285 May 31 12:45 rh.sphere.reg -rwxrwxr-x 1 jliu jliu 4853068 May 31 09:43 rh.smoothwm -rwxrwxr-x 1 jliu jliu 4853068 May 31 09:43 rh.orig
The log file is attached. What should I do to correct this problem?
Thanks
again for your help!
Best,
jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, May 29, 2005 9:42 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
you will need to rerun the morph. On Sun, 29 May 2005, Jia Liu wrote:
Hi, Bruce-
No, the ?h.sphere.reg files are slightly larger than the orig files.
Below
is the list of files in the surf directory.
-rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.inflated -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.orig -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.pial -rw-rw-r-- 1 app app 4858721 Mar 16 23:46
lh.rh.sphere.reg
-rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.smoothwm -rw-rw-r-- 1 app app 4858504 Mar 16 20:35 lh.sphere -rw-rw-r-- 1 app app 4858721 Mar 16 22:14
lh.sphere.reg
-rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.white -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.inflated -rw-rw-r-- 1 app app 4853285 Mar 16 18:54
rh.lh.sphere.reg
-rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.orig -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.pial -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.smoothwm -rw-rw-r-- 1 app app 4853068 Mar 16 15:17 rh.sphere -rw-rw-r-- 1 app app 4853285 Mar 16 16:59
rh.sphere.reg
-rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.white
Will this affect the surface-based group analysis?
Thanks again for your help!
Best,
jia
> -----Original Message----- > From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] > Sent: Friday, May 27, 2005 8:10 PM > To: Jia Liu > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] questions on check_subject > > not sure why the smoothwm would be different size. Is it the same
size
as
> the orig? How about the rest of the surfaces for each hemis
(sphere,
white, > pial) > > On Fri, 27 May 2005, Jia > Liu wrote: > >> Hi, >> >> I used check_subject and found following error message on all my subjects: >> >> Zion:/nfs/home/Subjects> check_subject subKL >> CHECKING SUBJECT subKL >> WARN: file rh.sphere.reg is not equal in size to rh.smoothwm >> WARN: file lh.sphere.reg is not equal in size to lh.smoothwm >> WARN: file lh.rh.sphere.reg is not equal in size to lh.smoothwm >> Exit 3 >> >> However, I looked through recon-all log files and found no error messages. >> So what does the error message above mean? How to correct this
problem?
Is >> there any document on check_subject? Thanks a lot for your help! >> >> Best, >> >> Jia >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Jia,
as long as the faces/vertices/edges (134807 404415 269610) are the same across surfaces, the you should be fine.
Bruce On Tue, 31 May 2005, Jia Liu wrote:
Below is the output from mris_euler_number:
zion:/nfs/home/Subjects/ttt/surf> mris_euler_number rh.sphere.reg euler # = v-e+f = 2g-2: 134807 - 404415 + 269610 = 2 --> 0 holes F =2V-4: 269610 = 269614-4 (0) 2E=3F: 808830 = 808830 (0) total defect index = 0
zion:/nfs/home/Subjects/ttt/surf> mris_euler_number rh.smoothwm euler # = v-e+f = 2g-2: 134807 - 404415 + 269610 = 2 --> 0 holes F =2V-4: 269610 = 269614-4 (0) 2E=3F: 808830 = 808830 (0)
total defect index = 0
zion:/nfs/home/Subjects/ttt/surf> mris_euler_number rh.orig euler # = v-e+f = 2g-2: 134807 - 404415 + 269610 = 2 --> 0 holes F =2V-4: 269610 = 269614-4 (0) 2E=3F: 808830 = 808830 (0) total defect index = 0
Besides, there is no version # for mris_register (mris_register --version), but we are using the newest release (February 18th 2004). Thanks again for your help on this issue.
Jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tuesday, May 31, 2005 8:16 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
can you run mris_euler_number on them and send me the results? It may be that you have a somewhat newer version of mris_register that embeds geometry info into the surface file.
On Tue, 31 May 2005, Jia Liu wrote:
No, I am using Linux (Fedora 1) but not Mac OS X, and yes, the problem exists in all my subjects (I happened to notice it when I ran check_subject). Best, jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tuesday, May 31, 2005 7:43 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
is this only on Tiger? And does it happen with all your subjects now
that
you have upgraded? On Tue, 31 May 2005, Jia Liu wrote:
Hi, Bruce-
Thanks for your reply. I re-did morph for the right hemisphere, and
the
problem persists.
CHECKING SUBJECT ttt WARN: time for rh.orig is older than rh.qsphere WARN: file rh.sphere.reg is not equal in size to rh.smoothwm
-rw-rw-r-- 1 jliu jliu 4853285 May 31 12:45 rh.sphere.reg -rwxrwxr-x 1 jliu jliu 4853068 May 31 09:43 rh.smoothwm -rwxrwxr-x 1 jliu jliu 4853068 May 31 09:43 rh.orig
The log file is attached. What should I do to correct this problem?
Thanks
again for your help!
Best,
jia
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, May 29, 2005 9:42 PM To: Jia Liu Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] questions on check_subject
you will need to rerun the morph. On Sun, 29 May 2005, Jia Liu wrote:
> Hi, Bruce- > > No, the ?h.sphere.reg files are slightly larger than the orig files.
Below
> is the list of files in the surf directory. > > -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.inflated > -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.orig > -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.pial > -rw-rw-r-- 1 app app 4858721 Mar 16 23:46
lh.rh.sphere.reg
> -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.smoothwm > -rw-rw-r-- 1 app app 4858504 Mar 16 20:35 lh.sphere > -rw-rw-r-- 1 app app 4858721 Mar 16 22:14
lh.sphere.reg
> -rwxrwxrwx 1 app app 4858504 Mar 8 2004 lh.white > -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.inflated > -rw-rw-r-- 1 app app 4853285 Mar 16 18:54
rh.lh.sphere.reg
> -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.orig > -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.pial > -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.smoothwm > -rw-rw-r-- 1 app app 4853068 Mar 16 15:17 rh.sphere > -rw-rw-r-- 1 app app 4853285 Mar 16 16:59
rh.sphere.reg
> -rwxrwxrwx 1 app app 4853068 Mar 8 2004 rh.white > > Will this affect the surface-based group analysis? > > Thanks again for your help! > > Best, > > jia > >> -----Original Message----- >> From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] >> Sent: Friday, May 27, 2005 8:10 PM >> To: Jia Liu >> Cc: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] questions on check_subject >> >> not sure why the smoothwm would be different size. Is it the same
size
as
>> the orig? How about the rest of the surfaces for each hemis
(sphere,
> white, >> pial) >> >> On Fri, 27 May 2005, Jia >> Liu wrote: >> >>> Hi, >>> >>> I used check_subject and found following error message on all my > subjects: >>> >>> Zion:/nfs/home/Subjects> check_subject subKL >>> CHECKING SUBJECT subKL >>> WARN: file rh.sphere.reg is not equal in size to rh.smoothwm >>> WARN: file lh.sphere.reg is not equal in size to lh.smoothwm >>> WARN: file lh.rh.sphere.reg is not equal in size to lh.smoothwm >>> Exit 3 >>> >>> However, I looked through recon-all log files and found no error > messages. >>> So what does the error message above mean? How to correct this
problem?
> Is >>> there any document on check_subject? Thanks a lot for your help! >>> >>> Best, >>> >>> Jia >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Jia Liu