Here are some instructions. I have not tested them myself, so make sure you check the registrations along the way.

doug

1. Register functional (template.nii) to anatomical matrix (may already be done in fsfast)

bbregister --s $subject --bold --init-fsl \ --mov template.nii --reg register.dof6.dat

2. Register anatomical to mni152: mni152reg --s $subject Creates $SUBJECTS_DIR/$subject/mri/transforms/reg.mni152.2mm.dat

3. Check registration tkregister2 --mov $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz \ --reg $SUBJECTS_DIR/$subject/mri/transforms/reg.mni152.2mm.dat

4. Create registration between functional and mni152 mri_matrix_multiply -im register.dof6.dat \ -iim reg.mni152.2mm.dat -om reg.mni152.dat

5. Check registration tkregister2 --targ $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz \ --mov template.nii --reg reg.mni152.dat

6. Resample func to mni152 space mri_vol2vol --targ $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz \ --mov template.nii --reg reg.mni152.dat --o template.mni152.nii

Yigal Agam wrote:

Hi,

Is it possible to export a functional volume from individual brain space to mni152, so it can be overlaid on the standard mni152 brain in fslview?

Thanks, Yigal _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer